Methanobrevibacter sp. AbM4: Abm4_1694
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Entry
Abm4_1694 CDS
T02687
Symbol
rpaI
Name
(GenBank) replication factor A RpaI
KO
K07466
replication factor A1
Organism
meb
Methanobrevibacter sp. AbM4
Pathway
meb03030
DNA replication
meb03420
Nucleotide excision repair
meb03430
Mismatch repair
meb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
meb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Abm4_1694 (rpaI)
03420 Nucleotide excision repair
Abm4_1694 (rpaI)
03430 Mismatch repair
Abm4_1694 (rpaI)
03440 Homologous recombination
Abm4_1694 (rpaI)
03460 Fanconi anemia pathway
Abm4_1694 (rpaI)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
meb03000
]
Abm4_1694 (rpaI)
03032 DNA replication proteins [BR:
meb03032
]
Abm4_1694 (rpaI)
03400 DNA repair and recombination proteins [BR:
meb03400
]
Abm4_1694 (rpaI)
Transcription factors [BR:
meb03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
Abm4_1694 (rpaI)
DNA replication proteins [BR:
meb03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
Abm4_1694 (rpaI)
DNA repair and recombination proteins [BR:
meb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
Abm4_1694 (rpaI)
MMR (mismatch excision repair)
Abm4_1694 (rpaI)
DSBR (double strand breaks repair)
HR (homologous recombination)
Abm4_1694 (rpaI)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_anti-codon
CDC24_OB3
REPA_OB_2
Rep_fac-A_C
OB_MEIOB_N
SHLD2_OB1
Zn_Ribbon_TF
DUF5088
DUF7764
DUF7575
Zn_ribbon_6
KOW2_Spt5
DZR
Zn_ribbon_PADR1
Zn_ribbon_RRN7
Motif
Other DBs
NCBI-GeneID:
15799182
NCBI-ProteinID:
AGN17550
UniProt:
R9SM71
LinkDB
All DBs
Position
complement(1941272..1943641)
Genome browser
AA seq
789 aa
AA seq
DB search
MEEDVRKEYEKIKDVMSEEDFLKELEEKKKNYEDVDFMDDIDLARLITGKYIDEKNEGIV
SGDNIKIGDLEAGQDHVTVIGRVMSVANTKSFKTRKGKDGKLCNVQLADDTGQKKVVFWT
QNIPLLKNVSEGDVIQINDVDVKEGFNNADEIHLQPRSTINKKNPDDYPDFPEYKEDITD
IGSISLDDNKVNIIGRIIRKGRVNTFERDGREGKVTSLELQDGTGKIQYSLWNKDVDLID
TLELDVGDSIKVLNAVVRENRNEIALTHRNSKIIKGDFDVPEMEETLFKIGDAEEKNDVT
LIGLVSKIQDTITFERKDGTEGHVKTIEILDDTGSIRVTLWGNDTKLDIKKGDILKVSGG
NIEYDDYSTSGYRVNTNWQSSFTINPKEPADLIAVLEEYKMSLGPRKIEQVQQAEEDGEE
FDIIGRVLSIQDVREFQRDDNSIGLVRSVDFADETGLITLSLWDDKANEDLEIGHAYLIE
NARTRLGMYDIQLNIGKTSRIIPLNEEESKYISSLETLENVVYNTRTIDELDEDDQNIKL
IGRILSVNEIREFERDDGSKGSVRNMEIADNTGSIRVANWSPDSSKEFKIGDPIKLINPR
VTFNGDHLELSINGSSNISEISDKEIKSLPSFEDIQDSIYVSKTIETIEDDDTNIRVSGT
LNNLSANNLLLARCPNCNSRLDKDEEGYYCQYCGEAIDEPSYLLMLPGMLSDDTGDIQIT
FFSRLVEELLDLKQDEIIKLVDDSGDLGPLEGKVENLEGMNIDIIADVNFNDFDEELRLS
PKKIISKSY
NT seq
2370 nt
NT seq
+upstream
nt +downstream
nt
atggaggaagacgtaagaaaagaatatgaaaaaatcaaggatgtaatgtctgaagaggat
tttttaaaggaattggaagaaaagaagaaaaactatgaagatgtagactttatggatgat
attgatcttgctagacttattacaggaaaatacattgatgagaaaaatgaaggtattgtt
tctggagacaatattaagattggcgatttagaggctggtcaggatcatgttactgttatt
ggtagggtaatgtctgttgcaaataccaaatcttttaagactcgtaaaggtaaagacgga
aaactttgtaatgtacaacttgccgatgatactggacagaaaaaggttgttttctggact
cagaatatccctcttttaaagaatgtttccgagggggatgttattcagattaatgatgtg
gatgttaaggaaggttttaataatgcagatgaaatacaccttcaacctcgttccactatt
aacaagaaaaaccctgatgattatcctgattttcctgaatataaagaggatattacagat
attggctctataagtttagatgataataaagttaatataatcggaagaattatacgtaaa
ggacgtgtaaatactttcgaacgtgatggtagagaaggaaaggtcacatcacttgaactt
caggatggaactggcaaaattcaatatagtttatggaataaagatgttgatttgattgat
actttagagttagatgtaggagattcaattaaagtattaaatgcagttgtaagggaaaat
cgtaatgagattgctttaactcatagaaacagtaaaatcattaaaggagatttcgatgtt
cctgagatggaagaaacccttttcaagataggtgatgctgaagagaaaaacgatgtcaca
ttaataggccttgtatctaaaattcaggatactattacttttgaacgtaaagacggaaca
gaaggccatgttaaaaccattgaaattttagacgatacaggttccataagggttactcta
tggggtaatgataccaaattggatattaaaaaaggggatattctaaaggtttccggtggt
aacatagaatacgatgattattccacttccggttatagggtaaatactaattggcaatct
agtttcacaataaatccaaaagaacctgcagatttaattgctgtacttgaagaatataaa
atgagtttaggacctcgtaaaatcgaacaagttcaacaggcagaggaagacggagaggaa
ttcgacattattggtcgtgttctcagtattcaggatgtcagggaattccaaagagatgac
aattcaatcggtttagtcagatcagttgattttgctgatgagactggattgattaccttg
tctttatgggatgataaagcaaacgaggatttggaaattggtcatgcttatttaattgaa
aatgcaagaacaagacttggaatgtatgatattcaattaaacattggtaaaacatctagg
attattcctttaaatgaggaagaatccaaatatatatcttcacttgaaactttggaaaat
gttgtttataacacaagaactattgatgagttagatgaggatgatcaaaacatcaaactt
attggaagaattttaagtgttaatgagattagagagtttgaaagggatgacggttctaaa
ggttctgtaagaaatatggaaattgctgataatactggatctattagggtagctaattgg
agtccagattcttctaaagaatttaaaataggcgatcctattaaattaatcaatccacgt
gttacttttaatggggatcatttggaattaagtattaacggtagttctaatatctcagaa
ataagtgataaagagattaagtctttaccatcatttgaggatatacaagattcaatatat
gtttcaaagactatagaaactattgaagatgatgatacaaatattagagtctcaggtact
ttaaataatttatctgctaataatttattacttgcaagatgtcctaattgtaattcaaga
ttagacaaagatgaagaaggttattattgtcaatactgtggtgaggcaatcgatgaacct
agttatttattaatgcttccaggtatgctttcagatgatactggagatatacagattact
ttcttctcacgcttggttgaggaattattagacttgaaacaggatgaaattattaagctt
gttgatgatagtggtgatttaggacctttagaaggtaaagtagagaatttagaaggtatg
aatatagacattattgccgatgttaactttaatgattttgatgaggagttaaggttaagt
cctaagaaaattatctcaaaatcttattaa
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