Metabacillus sp. B2-18: LPC09_01140
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Entry
LPC09_01140 CDS
T09916
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mebz
Metabacillus sp. B2-18
Pathway
mebz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mebz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LPC09_01140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mebz03019
]
LPC09_01140
03009 Ribosome biogenesis [BR:
mebz03009
]
LPC09_01140
Enzymes [BR:
mebz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LPC09_01140
Messenger RNA biogenesis [BR:
mebz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LPC09_01140
Ribosome biogenesis [BR:
mebz03009
]
Prokaryotic type
rRNA helicases
LPC09_01140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
AAA_22
CMS1
PRP38_assoc
Motif
Other DBs
NCBI-ProteinID:
UGB31191
LinkDB
All DBs
Position
204174..205703
Genome browser
AA seq
509 aa
AA seq
DB search
MNTLTLTFQDLGLSTSLMESISKMGFEEPSPIQAQTIPLGLQKKDVIGQAQTGTGKTAAF
GIPLIEKIDVKSNNIQAVVVAPTRELAIQVSEELYKIGYHKRSRVLPIYGGQDINRQIRS
LKKNPHIIVGTPGRLLDHINRKTLRLSGVHTIVLDEADEMLNMGFIEDIEAILSNVPEER
QTLLFSATMPDPIRRIAEKFMKDPELVKVKAKEMTVPNITQYYLETHERKKFDVLTRLLD
IQSPELAIVFGRTKRRVDELSEALTLRGYTAEGIHGDLTQAKRMSTLRKFKEGAIEVLVA
TDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFVTPRELDIVKNIE
RTTKRKMDRMKPPTVDEAIESQQQMTVEKIRSIIEGENLSFYKRTAEELLEEFDAQDVVA
AAIKFMTKEPTAVEVKLTEEAPLYSRSKNKGGRSSGNRRKGDYNRGGGGGGQKNRSSYGN
RDRDRDRDRDRGGKSGQGGNNKRRYSNSK
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atgaatacattgacattaacgtttcaagatttaggtttaagtacgtcattgatggaatca
ataagtaaaatgggatttgaagaaccatcaccaattcaagcacaaacgatcccgttaggt
ttgcaaaagaaggatgttattggacaggcgcaaacaggtactggtaaaacagctgcattt
ggtattccgcttattgaaaagattgatgtgaaaagtaacaacattcaagctgttgttgtt
gctccaactcgtgaacttgctattcaggtatcagaagaactatacaaaattggttatcac
aagcgctctcgtgttctccctatttatggtggtcaagatattaacagacaaattcgttca
ttaaagaaaaacccacatattatcgttggaacacctggacgattattagaccatattaat
cgtaaaacccttcgtttaagcggcgttcatacaattgtattggatgaagcagatgaaatg
ttaaacatgggcttcattgaggacattgaggcgattctttcaaatgtaccagaggagcgt
caaacattacttttctcagcaacaatgccggatccaatccgtcgtatcgcagagaaattt
atgaaagaccctgagcttgtaaaagtaaaagcaaaagaaatgacagttccaaatattaca
caatactaccttgaaacacacgaaagaaagaaattcgatgttttaacaagattacttgat
attcaatctcctgaacttgcgattgttttcggtcgtacaaagcgtcgtgttgatgaatta
tctgaagcattaacgttaagaggttatacagctgaaggtattcatggtgacttaacacag
gctaaacgtatgtctactctacgcaaatttaaagaaggtgcaattgaagtactagttgca
acagacgttgcagcccgtggactagatatttcaggtgttacacatgtttataatttcgat
gtacctcaagatccagaaagctatgttcaccgtattggacgtacaggtcgtgcaggtaaa
acaggtatggcgatgactttcgttacacctagagaattagacattgtaaaaaacattgag
cgtacaacaaaacgcaaaatggatcgcatgaagccaccaactgttgatgaggcgattgaa
agtcaacaacaaatgacagtggaaaaaattcgctcaatcattgaaggtgaaaacctttct
ttctacaaacgtacagcagaagagcttcttgaagagttcgatgcacaagatgtagtagct
gctgcaattaaatttatgacaaaagagccaactgctgttgaggttaaactaacagaagaa
gctccgttatactcaagatctaaaaacaaaggtggccgctcttctggcaatagaagaaaa
ggtgactacaatcgcggcggcggcggtggtggacaaaagaatcgttcatcatacggtaac
cgtgaccgtgaccgtgaccgtgatcgtgatcgtggtggtaaaagtgggcaaggcggtaat
aataaacgccgttactcaaactcaaaataa
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