Metabacillus sp. B2-18: LPC09_01795
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Entry
LPC09_01795 CDS
T09916
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
mebz
Metabacillus sp. B2-18
Brite
KEGG Orthology (KO) [BR:
mebz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mebz03009
]
LPC09_01795 (rlmD)
Enzymes [BR:
mebz01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
LPC09_01795 (rlmD)
Ribosome biogenesis [BR:
mebz03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
LPC09_01795 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
TRM5-TYW2_MTfase
Cons_hypoth95
PrmA
Methyltransf_15
MTS
RrnaAD
TRM
Methyltransf_11
PCMT
N6_Mtase
DOT1
UPF0020
Motif
Other DBs
NCBI-ProteinID:
UGB31292
LinkDB
All DBs
Position
340185..341570
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AA seq
461 aa
AA seq
DB search
MAKIQAPVMKNEYYDVVFEDLTHEGAGVAKVEGFPIFVENALPDERAKIKVIKVNKGFAF
GRLIELHEQSKNRIDAPCPIYSQCGGCQLQHLSYEGQLDFKRKQVEQVLARIGKLDLNKV
TVHPTLGMENPWNYRNKAQVPVGEREGGLVAGFYQKRSHDIIDMERCLIQQAENDDVVQA
VKTICEKYGIRAYNEEKHKGWLRHIMVRYGLVTSEIMVVFVTRTADFPHKSEVITEITNQ
LPQVKSVVQNINNKKTNVIFGDETNVLWGEEYIYDKIGDVKFAISARSFYQVNPEQTKVL
YDKALEYAELTGEESVIDAYSGIGTISLFLAQKAKKVFGVEIVPEAIEDAKRNAELNGIA
NAEFAVGEAEVVIPEWYKQGNQADVIVVDPPRKGCDEALLKTILDMKPGKVVYVSCNPGT
LARDLQVLELGGYKTVEVQPVDMFPHTTHVECISQLVLKND
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaattcaagcacctgttatgaaaaatgaatattacgatgtggtctttgaggac
ttaacgcatgaaggtgcgggtgtcgcaaaggtagaaggctttccgatctttgttgaaaat
gcactgccggatgaacgagcaaaaataaaagttatcaaagtaaacaaaggcttcgcgttc
ggacgactaattgagctccatgaacaaagtaaaaaccgaattgatgcgccttgcccaatc
tattctcaatgtgggggctgccagcttcagcatcttagctatgaaggacagcttgatttt
aaacgaaaacaagtggagcaggtccttgctagaataggcaaactagatttaaacaaagta
accgtacatccgactctaggcatggagaatccttggaattaccgaaacaaagctcaggtt
ccagtaggtgaacgtgagggtggtctagtcgctggcttctatcaaaaaagaagccatgac
atcattgatatggaaagatgccttattcagcaagctgagaacgatgatgttgttcaagcg
gtgaaaaccatttgtgaaaaatatggcattcgtgcttataacgaagaaaagcacaaaggc
tggcttcgtcatattatggttcgttatgggctagtcacgagcgagatcatggttgtattt
gtgacaagaacggctgactttccacataaaagtgaggttatcactgaaataacaaatcaa
ctaccacaagtgaagtctgttgtgcaaaatattaataacaaaaaaacaaatgtcatcttt
ggcgatgaaacaaatgtactttggggagaagagtatatttacgataaaattggtgacgta
aagttcgcaatatctgcacgctctttttatcaagtaaacccagagcaaacaaaggtgcta
tatgacaaagctttagaatacgcagaattaacaggtgaagaatcagttattgatgcttac
agtggaattgggacgatttcgttgtttctagcccaaaaagcaaagaaggtttttggggtg
gaaatagttccagaagcaatagaagatgcaaagcgaaatgcagagctgaatggcattgct
aatgcagagtttgccgttggtgaagcggaggttgtcattcctgagtggtacaagcaaggt
aatcaggcagatgtaattgttgtcgaccctccacgtaagggctgtgacgaagcattatta
aagacaatcttggatatgaagcctgggaaggttgtttatgtttcgtgtaatcctggaacg
cttgcgagggatttgcaggtgttggagttaggtggatataaaacggttgaggtgcagccg
gtggatatgtttccgcatacgacgcatgtggagtgcatttcacagttagttttaaaaaat
gattga
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