Metabacillus sp. B2-18: LPC09_08740
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Entry
LPC09_08740 CDS
T09916
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mebz
Metabacillus sp. B2-18
Pathway
mebz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mebz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LPC09_08740 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mebz03019
]
LPC09_08740 (recQ)
03400 DNA repair and recombination proteins [BR:
mebz03400
]
LPC09_08740 (recQ)
Enzymes [BR:
mebz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LPC09_08740 (recQ)
Messenger RNA biogenesis [BR:
mebz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LPC09_08740 (recQ)
DNA repair and recombination proteins [BR:
mebz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LPC09_08740 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HTH_40
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
GerE
TRAPP
PSII_Pbs27
DUF4911
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
UGB32498
LinkDB
All DBs
Position
1739983..1742121
Genome browser
AA seq
712 aa
AA seq
DB search
MLQKAEKLLKDYFGYSSFRKGQVDIIRNILEGHDTLAIMPTGGGKSICYQVPALLMDGIT
VVISPLISLMKDQVDALTSVGIPSTYINSSLSIPDINERIAELRDGSYKIVYIAPERLET
NSFRDLLLTLNISMVAVDEAHCISQWGHDFRPSYRSINKMIMDLSTKPIVVALTATATKE
VIADICHLLDLSEEDSFVTGFSRENLTFNVVKGENKRDYIKKYIKANKNEAGIIYAATRK
EVDELSQFLKKSGFKAGKYHAGMSEQERAQQQDQFLYDEFDVMVATNAFGMGINKSNIRY
VIHHNLPKNIEAYYQEAGRAGRDGEPSECTILFAGQDIQLQKFLIEQTSLSYEKKVHEYQ
KLQQMVDLCHTEKCLQSYIVEYFGEENAEADCGNCMNCKDTREKIEVTTEALMVFSCVKR
MNEKFGKTLVAQVLKGSNNKRISQMGFQKLSTYGLMKNKTEKQIVEFIDFLIAEGYLSLT
NAQYPVIELSKKGLLVLVDKTPVFKKEKLVISSIESNDELFEVLKNIRRELASEHRVPPY
IIFSDSSLKDMSNKCPINESEFLEVKGVAQTKLERYGQPFIKAICDYMKVEQEPLNQIVI
QKSHSQISADKTPSHLVTYQLYMNGLKMNEISIQREITEITVQNHIIRAVEEGQPIEWRG
IFTEEQENLIIEKIKELNTELLKPLKEVLPSSINYFQIKAAICKLNLEVISS
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atgctgcaaaaagctgaaaagttgttaaaagattatttcggttattcatcgtttcgaaaa
ggccaagtggatattattcgtaatatattagagggacatgacacgctagccattatgcca
acaggtggtgggaaatccatctgttatcaagtgcctgcattattgatggatggtattact
gttgtcatatctccactaatttctttaatgaaagatcaagtagatgctttaacaagtgtt
ggaataccatcaacttatataaatagcagtctttccattccagacataaatgaacgaatc
gcagagctaagagatggctcttataaaattgtttatattgcacctgagagattagaaacg
aattcgtttcgagacctcttattaacgttaaatatttctatggtagcagtagatgaggca
cactgtatatctcaatgggggcatgattttcgacctagttacaggtcgataaataagatg
ataatggacctttctactaaaccaattgtcgttgcccttacagcaacagcaacaaaagaa
gtaatagctgatatttgtcatttgttagatttatcagaggaggattcgtttgttactggt
ttttcccgagaaaacctaacatttaatgtagttaaaggtgaaaataagcgcgactatatt
aaaaaatatattaaagcaaataaaaatgaagctggcattatttatgctgctactcgaaaa
gaagtagatgaattatctcaatttcttaaaaaaagcggcttcaaggcagggaaatatcat
gctggtatgtcagaacaagagcgagcacaacagcaggatcaatttttatatgacgagttt
gatgttatggttgcaacaaacgcttttggtatgggaataaacaaatccaatattcggtat
gtcattcatcataatttacctaaaaatatagaggcttactaccaggaagcaggccgtgcc
gggcgggatggggagcctagtgaatgtacgattctgtttgctggacaagacatacagctt
caaaaattcttaatagaacaaacatctctaagttatgaaaagaaggttcatgaatatcaa
aaattacagcaaatggtagatctctgtcatactgaaaaatgtttacaatcttatattgtt
gaatattttggtgaagagaatgcggaagcagattgtggcaattgcatgaattgtaaggat
acacgagaaaaaattgaggtaacaactgaagctttaatggttttttcttgtgtgaaaaga
atgaacgaaaaattcgggaaaactcttgtagcgcaagtactaaagggttctaataataag
cggatttctcagatgggatttcaaaaattatcaacctatgggttaatgaagaacaagaca
gaaaaacaaattgtagaatttattgattttttaattgctgaaggttatttatctttaaca
aatgctcaataccctgttatcgaacttagtaaaaaggggttacttgtattagttgataaa
acgccagtatttaagaaggaaaaactagtgatttcatcaattgaaagcaatgatgaacta
tttgaagtactaaagaatataagaagagaacttgcttctgaacatagagtaccgccttat
attatattttctgatagtagcctaaaagacatgagtaataaatgtccgattaatgagtct
gagtttttagaagtaaaaggtgttgctcaaacaaagcttgaacgttatggacaaccattt
attaaggcaatttgtgactatatgaaagttgaacaagagccacttaatcaaatagtgata
caaaaatcacattcacaaatatcggctgataagacacctagtcatcttgttacctatcaa
ttatatatgaatgggttaaagatgaatgagattagtatacaacgggaaattactgaaatc
actgtacaaaaccatatcattcgagcggtggaagaaggacaaccgattgaatggagaggc
atatttaccgaagaacaagagaacttaatcatagagaaaattaaggaattgaatactgaa
ttgctaaagcccttaaaagaagtgttaccttctagcattaattattttcaaataaaagcg
gcaatttgtaagttgaatctagaagtgatcagttcgtga
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