Metabacillus sp. B2-18: LPC09_09975
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Entry
LPC09_09975 CDS
T09916
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
mebz
Metabacillus sp. B2-18
Pathway
mebz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mebz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LPC09_09975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mebz03019
]
LPC09_09975
Messenger RNA biogenesis [BR:
mebz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LPC09_09975
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
UGB33338
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Position
1988873..1990540
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AA seq
555 aa
AA seq
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MYMEKTENIKLIALGGVGEVGKNMFVVEINSDIFVIDAGLMYPEDSMLGIDMVIPDITYL
KENEERIKGIFLTHGHDESIGGIFYLLNNLSVPIYGTKLTLALVGEKLKENRMRQSVFVK
EVDNETILSFPSTEISFFRTNHSIPDSVGISFETSMGAIIHTGDFKIDQTPVADSHMDIG
KIAKLGENGVLCLLSDSINAERPGYSGSEARVGGEISDVMYNADGRVIVAVFASNLYRIQ
QVINAAVKNNRKLAVVGKNMKSILNLAISLGYISVEEELFISVNEIDKHESNEVAILTTS
NHGEPLAVLSRMAKQSHKLVNVKDGDTVLIAATPIPGHELVFSKTIDLLSRAGANVIFGQ
KQIHVSGHGHQEELKMMLNLTKPKYFIPIHGEFKMQKAHEKLAKQVGIEPQNIFLVDKGE
VVEFKGLNVYTGAKVPSGNVLIDGLGIGDVGNIVLRDRRLLSQDGILIVVVTLNKQKKQI
TSGPEIITRGFVYVRESEELIGEATKVVSNIVERSMQEHSIEWSSIKLSIRESLNQFLYE
KTKRRPMILPIIMEI
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atttacatggaaaaaacagaaaatataaaattaattgctttaggtggagtaggagaagtc
ggaaaaaatatgtttgttgttgaaattaattctgacatatttgttattgatgccggctta
atgtatccagaagatagtatgctaggaattgatatggtcataccggatattacttacctt
aaggaaaatgaggaaagaataaaggggatctttttaacacatggtcatgatgaaagtatc
ggtggaatcttttatttactcaataatttaagtgttccaatttatgggacaaagcttact
ttggctctggttggagaaaagttaaaagaaaatcgtatgagacaatctgtgtttgttaaa
gaagttgataatgaaacgatattgtcatttccaagtacagaaatctcgttttttagaaca
aatcacagtatccccgattcagtaggtattagctttgaaacttctatgggagcaattatt
catactggagattttaagattgatcaaacaccagtagctgatagtcatatggatatcggt
aaaattgctaagttaggtgaaaacggtgtcttatgcttactatctgatagtataaatgca
gaaagaccaggttattctggttcagaagccagagtaggtggagaaatttcagatgttatg
tacaatgcagatggaagagtaatagttgctgtttttgcttcaaacttatatcgaattcaa
caagtaattaatgcggcagtgaaaaacaatcgtaaattagctgttgttggaaaaaatatg
aagagtatactaaatttagcgataagtcttggctacatctctgttgaagaagaactcttc
atttccgtaaatgaaattgataaacatgaatcaaatgaagtggccatattaacgacaagt
aaccatggcgagccacttgctgttttatctagaatggctaagcagtcacataaattggtg
aatgtgaaagatggagatactgttcttattgctgcgacacctatacctggtcatgaactg
gtattttctaaaaccattgatctattaagtagagcaggagccaatgtaatttttggacaa
aaacaaatacatgtttcgggacatgggcatcaggaagaattaaaaatgatgcttaattta
acaaagccaaaatattttataccaattcatggcgaatttaaaatgcaaaaggctcatgaa
aaactggcaaaacaagttggtattgaacctcaaaatatcttcttagttgataaaggagaa
gtagtagagttcaaaggactgaatgtttacactggtgcaaaagtaccttcagggaatgtt
ctgattgatggtttagggattggcgatgttggtaatatcgttcttcgagaccgcagatta
ttatcacaagatggaattttaattgtagtcgtaacacttaataagcagaaaaagcagata
acctcaggtcctgagattatcacaagagggttcgtatatgtaagggaatctgaggaacta
atcggagaagcgactaaggttgtatcaaacatcgtagaacgaagtatgcaggaacactct
attgaatggtcttcaattaaactgagcattcgtgaatcattaaatcaatttttatatgaa
aaaactaagagaagaccgatgattcttccaattatcatggaaatttaa
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