Metabacillus sp. B2-18: LPC09_18085
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Entry
LPC09_18085 CDS
T09916
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
mebz
Metabacillus sp. B2-18
Pathway
mebz03410
Base excision repair
mebz03430
Mismatch repair
mebz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mebz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LPC09_18085 (recJ)
03430 Mismatch repair
LPC09_18085 (recJ)
03440 Homologous recombination
LPC09_18085 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mebz03400
]
LPC09_18085 (recJ)
DNA repair and recombination proteins [BR:
mebz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
LPC09_18085 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
LPC09_18085 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LPC09_18085 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ssDNA-exonuc_C
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
UGB29639
LinkDB
All DBs
Position
complement(3546914..3549268)
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AA seq
784 aa
AA seq
DB search
MLKAKTRWMVQSSDETLIGTLIDNLSITPLVASLLVNRGIHSVEEAREFLEIEKQSFHDP
FLLKDMDKAVHRIKTAIEQNEHILVYGDYDADGVSSTTVLLTALRTLGANVDFYIPNRFT
EGYGPNEAAFRHAHEKGFSLIITVDTGIAAVHEAQVAKELGIDVIITDHHEPGPILPEAI
AIIHPKQPGCTYPFKELAGVGVAFKLSHALLGDVPTDLLEVAAIGTIADLVALHDENRLI
AKKGINQLKTTKRVGLKSLLKIANVKMDEINEDTIGFALGPRINAVGRLQSADPAVDLLL
SEDEEEAAAIAEEIDSLNKERQKLVSTMTEEAIEEVETRFPIEDHPVLVIAREGWNPGVV
GIVASRLVDRFYRPTIVLSIDREKGIAKGSARSIVGFDLFENLSTCRDILPHFGGHPMAA
GMTLNLDDVDLLRERLVEKAQNILTENDFIPVTKVDVSCNLEDISVNSIEEMQLLSPFGM
NNPKPVIQIENVTLANVRKIGAEQNHLKLVFSQEDYQLDCVGFGMGYIHDELSPSVTLSA
IGELSINEWNNLRKPQIMLQDIKVDEWQLFDFRGTRNVDKLVSSVATIDKSIIVTFQEKT
HDYVKSIGFEQKAMFLKTKQDAINLSVQNKHVILMDIPSSLDSFDALFSEGKPARIYSVF
QQDSDHFFSTIPTREHFKWYYGFLLKKGSFKLQEQGEQLAAHKGWTKETIEFMSQVFFEL
EFVTIENGVISTNSSTRKRDLTESKTYAQKQMRIELEKTLLYTSYMQLKQWFEERFPLDA
PVGV
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atgttaaaggcaaaaacaagatggatggttcaatcatctgatgaaaccttaattgggaca
ctaattgataacttatccattacaccgttagtcgcatctttacttgtaaatagaggcata
cattcagtagaagaagcacgtgaattcttggaaattgaaaaacaatcttttcatgatccg
tttcttctaaaagatatggacaaggctgtccaccgaataaaaacggcgatagaacaaaat
gagcatatattagtttatggagattatgatgctgatggagtaagcagtacaactgtatta
ttaacagctttacgtacactgggtgcaaacgtagatttctatattccaaatcgatttacc
gagggatatggaccaaatgaagctgcttttagacatgcacatgaaaagggtttttcttta
atcattacagttgatacaggaattgcagcagttcatgaagctcaagtggcaaaagaatta
gggatagacgtgattattactgaccaccatgagccaggtccgatccttccagaagcaatt
gcgattatccatccaaaacaaccagggtgtacctatccttttaaagagcttgctggggtt
ggagttgcctttaaattaagtcatgctctgcttggtgacgttccaactgatttattagaa
gtagcagcaataggaacaattgcagatttagtagcacttcatgatgaaaatagattaata
gctaaaaaaggtataaatcagttaaaaacaacaaaacgtgttggactaaaatcattgttg
aaaattgccaatgtcaagatggatgaaataaatgaggatacgataggttttgcactgggg
ccgcgaattaatgcagttggtcgtttacaatcagctgaccccgcagtggatcttcttctt
tctgaagatgaagaggaagctgcagctattgcagaggaaattgattctcttaacaaagaa
cgtcagaaacttgttagcacaatgacagaagaagcaattgaggaggttgaaactcgtttt
ccgatcgaggatcatccagttctagttattgctagagaaggctggaatccaggtgtggtt
ggtatagttgcatcaaggcttgtagatcgtttttatcgtccaacaattgttttaagcatt
gatagagaaaaaggaattgcaaaaggatcagctcgaagtatcgttggctttgatttgttt
gaaaatctatcaacatgtcgcgatattcttcctcattttggtgggcacccaatggcagca
ggtatgacactaaatctggatgatgttgatttactaagagaaagacttgttgaaaaggca
caaaacatattaacagaaaatgattttataccggtaacaaaagtggatgtaagctgtaat
ttagaagatatttcagttaattcaatagaagaaatgcagcttctttcaccctttggaatg
aacaatcctaaacctgttattcaaattgaaaatgttacattagcaaatgttcggaaaatt
ggtgctgaacaaaatcatctaaagttggttttttctcaagaagattatcagcttgattgc
gttgggtttggtatggggtatatccatgatgaactttcaccctctgttactttatcagca
attggggaactatctattaatgagtggaataatcttcgcaaaccacaaatcatgttacaa
gacattaaggttgatgagtggcagctgtttgattttagaggaacaagaaatgtggacaag
cttgtaagttcagtagcaactatagataaaagtataattgttacttttcaggaaaaaacg
catgattatgtgaagagtataggcttcgaacaaaaagctatgtttttaaaaacaaaacaa
gatgccataaatctatctgttcaaaataaacatgttattttaatggatattccatcatca
ctagattcttttgatgcacttttttctgaaggaaagcctgcaagaatttactcggtattt
caacaagattcagatcactttttttcaacgattccgacaagagaacactttaaatggtat
tatggatttcttttaaagaaaggctcttttaagcttcaagagcaaggtgaacaactagct
gctcataagggttggacaaaagaaacaattgagttcatgtcacaggtgttttttgaacta
gaatttgttacaatagaaaatggtgttatttcgacaaattcttcaactcgaaaacgagat
ttaacagaatcgaaaacatatgcccaaaaacaaatgagaatagaactagaaaaaacgtta
ttatatacatcttacatgcagcttaagcagtggtttgaagaaagatttccattagatgcg
cctgtaggtgtataa
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