Methylophaga frappieri: Q7C_1240
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Entry
Q7C_1240 CDS
T02056
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
mec
Methylophaga frappieri
Pathway
mec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Q7C_1240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mec03019
]
Q7C_1240
Enzymes [BR:
mec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Q7C_1240
Messenger RNA biogenesis [BR:
mec03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Q7C_1240
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
AFJ02390
UniProt:
I1YHJ7
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All DBs
Position
complement(1268641..1270029)
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AA seq
462 aa
AA seq
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MYEAAILADHQYKTFFLISSGNASIYMSAHLTDTAFSTLSLHENLQRGLADAGFAFCTPI
QAQTLPLLLLNKDVAGQAQTGTGKTIAFLLATFQRLLSQPAQIDPQQPRALILAPTRELA
IQIAKDAALLNKYANLRIALAHGGKDYQKQRDAIAAGCDMLIGTPGRLLDYHKQRVFDLR
QIQAVVLDEADRMFDLGFIKDVRYFLRRIPKPSKRLGMLFSATLSYKVLELAYEHMNNPE
KVQIAPEKVAADRIEETVYYPANDEKIPLLLALIKRINPLRSIVFVNTKHTADLVWGFLE
GNGHKAALLSGDVPQKKRERLLTHFQDGEFPFLVATDVAARGLHIPEVSHVFNYDLPQDS
EDYVHRIGRTARAGASGTAISFACEEYVFSLPDIERYIKHKIPVSSASDEQLATPAPAVK
PERKSAPKLKTGSSDKTRNATRRPRSRRKPKQSVSKPDANQS
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgtatgaggccgctatactcgcagaccatcagtacaagacattttttcttatcagttca
ggtaatgcaagtatttatatgagtgcccacctcaccgacaccgccttttcaacactctcc
cttcatgagaacctgcagcgtggactggctgacgccggatttgctttttgcactccgata
caagcgcagaccttaccactactattacttaacaaggatgttgctggacaggcgcaaacc
ggaacaggcaaaaccattgcttttttgctggcaacttttcagcgactattatcccaacca
gcacaaatcgatccgcagcaaccgcgcgcactgattttagcgccaacgcgtgaattggcg
attcaaattgcgaaagatgccgctttattgaataagtatgccaatttacgtattgctttg
gcgcatgggggtaaggattaccaaaaacaacgcgatgccatcgccgcaggctgtgacatg
ctgattgggacgccgggacggttattggactatcacaaacaacgggtttttgatttgcgg
caaattcaggcggtggtgctggatgaagcggaccgtatgtttgatctcgggtttatcaaa
gatgtgcgttactttctgcgccggattcccaagccaagtaaacggcttggcatgttgttc
tctgcgacgctcagctacaaagtgctggagttggcctatgagcacatgaataatccggaa
aaagtacaaattgcgcccgaaaaagtagccgcagatcgcattgaagaaacggtttactat
ccggcaaatgacgaaaaaattcctttgttactggcgttaatcaagcgtatcaatccctta
cgcagtattgtgtttgtcaataccaaacacactgctgatctggtctggggatttctggaa
ggtaacggacataaagccgcgttgttatcaggagacgtgccacaaaaaaagcgtgaacga
ttgcttacacactttcaggatggcgagtttccatttttagttgcaaccgatgtcgccgcg
cgggggctacatattccggaagtcagtcacgtttttaattacgatttacctcaggacagt
gaggattatgttcaccgtattggacgaaccgccagagcaggggctagtggcacggcaata
agctttgcctgcgaagagtatgtcttttcattgccggatattgagcgctacatcaaacac
aaaattccggtgtcatcagcctctgacgaacaattggcgacgcctgcgccagcagtcaag
cctgaacgcaaatcagcccctaagcttaaaaccggctcatcagataagacaagaaacgcg
acacgccggccgcgctcacggcgaaaaccaaagcaatcggtaagtaaaccggatgcaaat
cagtcctaa
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