Methylophaga frappieri: Q7C_2022
Help
Entry
Q7C_2022 CDS
T02056
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
mec
Methylophaga frappieri
Pathway
mec02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
mec00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Q7C_2022
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mec03021
]
Q7C_2022
Transcription machinery [BR:
mec03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Q7C_2022
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
AFJ03162
UniProt:
I1YJR9
LinkDB
All DBs
Position
2032907..2034745
Genome browser
AA seq
612 aa
AA seq
DB search
MKDQQSRVKELITLGKERGYLTYGEINDHLPEDLVDADQVEDIVSMFSDLGIMVHEDGMD
TDEMERLAEAVASNDEVSDDEAAAVLASSDGEFGRTTDPVRMYMREMGSVELLTREGEIV
IAKRIEAGLRESLVMLSTYPPCIAAFLTLFDAVEAGELRLNDLIRGFVQPEEELASQDDD
EDEADSNDNDDSDGDDDDDDDVSNVSDDDDDSGVIDPDEARERFTALKEAYLDVLSAEDD
ELIAAREQASNLFMEFRLTPKTLVTLNSLMTDTIDAIRKQEKIIMDIVVEDARMNRRDFI
DSFQGNESNLEWADKFIRAKKHYSSTIKKHHDDILDAQKQLADIAGERGLSISEIKEIAR
QMSIAEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQR
GYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRVARQMLQEMGREPTPDEL
AERVEMPEDKVRKVLKISKEPISMETPIGDDEDSHLGDFVEDVNVMSPADSAIIEGLREA
TQGVLNGLTEREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSR
SDQLRSFLDSDS
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatcaacaatcacgcgttaaagagcttattactttagggaaagagcgcggttat
cttacttatggtgagattaacgatcaccttcctgaagatttggtggatgcggatcaggtc
gaagatattgtcagcatgttcagtgatcttggcatcatggtgcatgaagatggtatggat
accgacgaaatggagcgactcgcagaggcggtcgccagtaatgatgaagtttctgatgac
gaagccgccgcagttctagcgagttctgatggcgagtttggccgaaccaccgatccggtg
cggatgtatatgcgggaaatgggcagtgttgaactactgacccgtgaaggcgaaattgtt
attgccaagcgtattgaagctggcctgcgtgaaagtctggttatgctgtctacctatccg
ccatgcattgcagcgtttctgaccttgtttgatgcggttgaagccggcgagttgcgactc
aacgacctgattcgtggttttgtgcaaccggaagaagagcttgccagccaagatgatgac
gaagacgaagcagacagcaacgataacgacgacagtgatggcgacgatgatgacgatgat
gatgtcagcaacgtcagcgatgacgatgatgattctggcgttatcgatcccgatgaagcg
cgtgaacgttttaccgcgctgaaagaagcttatctggatgtactcagtgctgaagatgac
gaactgatcgccgctcgtgaacaggccagtaacctgtttatggagtttcgcctgacgcca
aaaacgttggtcacgctaaacagtttgatgactgacactatcgacgctatccgtaaacaa
gaaaaaatcattatggatatcgttgttgaagatgcgcgcatgaatcgtcgtgactttatc
gactcattccaaggtaacgaaagtaatctggagtgggcagataaatttattcgcgccaaa
aaacattattcatcgacgataaaaaaacaccacgacgacattctcgatgcacaaaagcaa
cttgctgacatcgccggtgagcgtggtctgagcatttccgaaatcaaggaaatcgctcga
caaatgtcgattgctgaggctaaagcgcggcgtgccaaaaaagaaatggtcgaagctaac
ctgcgtttggtaatttcgattgccaaaaaatacaccaatcgtggcctgcaatttttggac
ttgattcaggaaggcaatatcggcctgatgaaagccgtcgacaaatttgaataccaacgc
ggttacaaattctcgacctatgcaacatggtggattcgtcaggcgattactcgttcgatt
gccgatcaggcccgaacgatccggattccggtgcacatgatcgaaacgatcaataaactg
aatcgtgtggcacgtcagatgctacaggaaatgggccgcgagccaacgcctgatgagctt
gctgaacgtgtagaaatgccggaagacaaagtccgcaaagtattgaagatttccaaagaa
cctatttcgatggaaacgccaatcggcgacgatgaagactctcatctgggcgattttgtg
gaagacgtcaatgtgatgtcgcccgccgactcagccattatcgaaggcctgcgtgaagca
acccaaggcgtgttgaatggcttgaccgagcgcgaagccaaagtgctgcgtatgcgattt
ggcattgatatgaataccgaccacacgctggaagaagtcggcaaacaattcgacgttacc
cgcgagcggattcgtcagatcgaagccaaggcgctgcgtaaactgcgtcatccgtcccgt
tcggatcaactgagaagcttcctcgactcagatagttaa
DBGET
integrated database retrieval system
