Methylophaga frappieri: Q7C_2186
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Entry
Q7C_2186 CDS
T02056
Name
(GenBank) Excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
mec
Methylophaga frappieri
Pathway
mec03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mec00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Q7C_2186
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mec03400
]
Q7C_2186
DNA repair and recombination proteins [BR:
mec03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Q7C_2186
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Q7C_2186
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
AAA_29
AAA_16
AAA_23
nSTAND1
AAA_22
RsgA_GTPase
DnaJ_CXXCXGXG
AAA_21
nSTAND3
Viral_helicase1
cobW
UBM
Motif
Other DBs
NCBI-ProteinID:
AFJ03322
UniProt:
I1YK79
LinkDB
All DBs
Position
2179416..2182235
Genome browser
AA seq
939 aa
AA seq
DB search
MKKISIRGARTHNLKNIDVELPRDALIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
ARQFLSMMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLFARAGEPRC
PTHDQPLAAQTVSQMVDSVLALPEGKRLMLLAPVIQDRKGEHRDLLEELRAQGFVRARVN
GEVIELDNPPELELRKKHTIEAVVDRFKVREDIQQRLAESFETALKLADGVAKVVSMDDA
DDVMLFSAKFACSTCGYSIAELEPRMFSFNNPAGACPTCDGLGVKQFVDPARVVAHPELS
LADGAIRGWDRRNAYYYQMLHALATHYQFDLEQPFDALPEAIRQIILHGSGREEIDFSYF
TDRGRRMTRKHRFEGIIPNLQRRYHETDSGSVREELARFHSVRTCPECQGARLNEAARHV
FINETNLPAITALPIGEAKTFFEQLRLTGQRAEIAGKIIHEISARLSFLVNVGLDYLTLA
RSAETLSGGEAQRIRLASQIGAGLVGVMYILDEPSIGLHQRDNDRLLATLTRLRDLGNTV
IVVEHDEDAIRSADYVLDIGPGAGVHGGAIVAQGSPDDIMKSEHSLTGQYLSGRRQIAVP
ASRESAHAGKVIGLRGACGNNLKQVDVDIPIGLMTCVTGVSGSGKSTLINETLLKLTAKT
LNGASDEPAPHTEILGLEQLDKVVAINQSPIGRTPRSNPATYTGLFTPIRELFAGTPEAR
SRGYGPGRFSFNVKGGRCEACQGDGLIKVEMHFLPDIYVPCDVCKGQRYNRETLDIRYKG
KTITEVLDMTIEEANVFFENIPVVAKKLQTLIDVGLTYIKLGQNATTLSGGEAQRVKLAK
ELSKRDTGKTLYILDEPTTGLHFFDIEQLLKVLHHLRDRGNTIVVIEHNLDVIKTADWII
DMGPEGGSGGGQVICSGTPEEVAKVTHSHTGHYLKALLS
NT seq
2820 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaatcagcattcgcggcgcccgtacgcataatcttaaaaatattgatgtggag
ttgccgcgtgatgccttgatcgtcattaccggtttgtccgggtccggcaaatcttcgctg
gcgtttgacaccctgtatgcagagggacagcgtcgttatgtcgagtcactttctgcttat
gcgcggcaatttttgtcgatgatggaaaagccggatgtcgatcatattgaaggtttatca
cccgcaatttctattgaacagaaatcgacctcgcataatcctcggtcaacggtcggcacg
attaccgagatctacgattatctccgtttgctttttgcgcgcgctggtgagccacgttgt
cccacgcatgatcaacccttagccgcgcaaaccgtcagtcagatggtggatagcgtactg
gcgttgcctgaaggaaaacgactgatgctgttggcgccggtcattcaggatcgtaaaggc
gaacaccgagatttactggaagaattacgggcgcagggctttgtgcgtgcaagagtgaat
ggtgaggtgattgaactcgacaatccacccgagttggaattacgaaaaaaacataccatt
gaagccgtcgtcgatcggtttaaggtgcgagaagatattcagcagcgcttggcggagtca
tttgaaacggcgctcaaactggcagatggcgtcgctaaagtggtgtcgatggacgatgcg
gatgacgtcatgctgttttctgcaaagtttgcctgtagtacatgtgggtattccattgct
gagctggaaccacggatgttttcttttaacaacccggctggcgcttgtccgacatgtgat
ggtttaggcgttaagcaatttgttgatccagcgcgtgtggttgcccatcccgagctcagt
ttggcggatggtgccattcgtggctgggatcggcgtaatgcctactattatcaaatgttg
catgctttggcgacgcattaccaatttgatctcgagcaaccctttgacgcgttgcctgaa
gctattaggcaaatcattttgcatggtagtggccgagaagaaattgattttagttacttc
acagaccgtggccgacgcatgacgcgtaagcatcgttttgagggcattattcccaatctg
caacgtcgttatcatgaaacggattcgggcagtgttcgagaagaactggcacggtttcac
tcagtgcgaacctgcccagagtgtcagggtgcacggctgaatgaagcggcacggcatgtc
tttattaatgaaaccaatttaccggcgattactgccttgccaattggtgaagccaaaacc
ttctttgaacagttgcgtttgactgggcagcgtgccgaaatcgcgggcaaaatcatccat
gaaatcagtgcgcgactaagctttctggtcaatgtcggcctggattatctaacgctagcc
cgcagtgcagaaactttgtcaggtggtgaggcgcaacggattcgtttagccagtcagatt
ggcgcgggtttggtcggagtcatgtacatattggacgaaccctctatcggcttgcatcaa
cgtgataatgatcggctgctggccacgctgacgcgattgcgtgatttgggcaatacggtg
attgtggttgagcatgatgaagatgccattcgcagtgcggattatgttttggatattggc
ccgggggcgggtgtgcatggtggcgctattgttgctcagggttcgccagacgacattatg
aaaagtgagcattcgctcaccgggcagtatttgtcgggccgtcgtcaaattgcggttcct
gccagccgggaatcagcccatgccggaaaagttattgggttgcgcggcgcttgtggcaat
aacctgaaacaggttgatgtcgatattcccattggtttaatgacttgtgttaccggtgtt
tccggtagcggtaagtcaacattaatcaatgaaacgctgctaaagctgactgccaaaacc
ttgaatggtgcttcagatgaaccggcaccacatactgaaatactgggtttggagcagctg
gacaaagtcgttgccataaatcaaagcccgattggtcggacaccgcgctctaatcctgca
acctataccggtttgtttacgcccattcgcgaattatttgctggaacgcctgaagcgcgt
tcccgtggctatgggccgggacgtttcagttttaatgttaaaggtgggcgttgtgaagcc
tgtcagggagatggcctgatcaaggtggaaatgcattttctgcctgatatttatgtgcct
tgtgacgtgtgtaaaggacagcgctataaccgcgaaacgctggatattcggtacaaaggg
aaaaccattaccgaagtgctggacatgactatcgaagaagccaatgtgttctttgaaaat
attccggtggtggcaaaaaaattacagacgttgattgatgtggggctgacctatatcaag
ttaggacagaacgcgacgaccctgtcgggcggtgaggcgcaacgcgtcaagctggcgaag
gaattgtccaagcgcgatactggtaaaacattgtatattcttgatgaaccgacaaccgga
ctgcacttttttgatattgaacaattgctgaaagtactgcatcacttgcgtgatcggggt
aacaccatcgtcgtcattgagcataatctggatgtcatcaaaacggctgactggatcatc
gatatggggccggaaggtgggtctggtggtggtcaggttatttgtagtggcacaccggaa
gaggttgccaaggttacccactcacatacaggacattacctcaaggcattgctgtcatga
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