Methylophaga frappieri: Q7C_2390
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Entry
Q7C_2390 CDS
T02056
Name
(GenBank) DNA-directed RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
mec
Methylophaga frappieri
Pathway
mec03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mec00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Q7C_2390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mec03021
]
Q7C_2390
03400 DNA repair and recombination proteins [BR:
mec03400
]
Q7C_2390
Enzymes [BR:
mec01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Q7C_2390
Transcription machinery [BR:
mec03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Q7C_2390
DNA repair and recombination proteins [BR:
mec03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Q7C_2390
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
7TMR-HDED
PrmC_N
Motif
Other DBs
NCBI-ProteinID:
AFJ03520
UniProt:
I1YKS7
LinkDB
All DBs
Position
2387401..2391477
Genome browser
AA seq
1358 aa
AA seq
DB search
MAYTFTEKKRIRKDFGKRSSVLTVPNLLATQVNSYQDFLQMGVAADERGSVGLHAAFESV
FPIKSHTGMAELQYVSYRLGVPTFDVKECQLRGVTYAAPLRVKMRLVIYDKDAPAKQKVV
KDIKEQEVYMGEIPLMTEKGNFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKILYNA
RVIPYRGSWLDFEFDPKDAVFVRIDRRRKLPATILLRALGYGNQEILEIFFDNDVFTRRK
AGFELALEPQRLRGQSVPFDILNKEGEVIVEAERQITGRHIRQLEKANMSALSVPEAYLV
GKVIAKDVIDTDTGELLANANDEITSDILEKFERFGVDSIETIYANDLDHGPYISDTLRL
DETRTDLEAKVEIYRMMRPGEPPTEDAAENLFQNLFFTHDRYDLSNVGRMKFNRRLGREE
LEGEGTLSKEDILAVISELISIRNGFGVVDDIDHLGNRRVRSVGEMAENQFRVGLVRVER
AVRERLSIAESEGLMPQQLINAKPVGAAIKEFFGSSQLSQFMDQNNPLSEVTHKRRVSAL
GPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLACYARTNKYGFIETPYRK
VIDGKATDEIIYLSAIDEGEYKIAQATIALNSDNSIADNLVPCRYRNEFSLTPSEQVQLM
DVSPRQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERVVAQDSG
VMVTAKRGGVVDSVDASRVVIRVNDDETEGNESGVDIYNLIKYARSNQSTCINQRPIVKP
GDIIGKGDTLADGPSTDKGELALGQNILVAFMPWNGYNFEDSILVSERVVEEDRFTTIHI
QELNCLARETKLGTEEITSDIPNVSESALAKLDESGIVYVGAEVKPGDILVGKVTPKGET
QLTPEEKLLRAIFGEKAADVKDSSLRVPSGTYGTVVDVQVFTRDGVDKDERTDQIEKAEL
EKVWADLKDQHRIMVDDVFSRLERNLTNKVAKKGPGIKKGDKLTKSVLKGLEQSQWFDLQ
MESDDLNAMLESASKQIQQYRNDMDEAFQIKKDKLTSGHDLAPGVQRMVKVFLAVKRRIQ
PGDKMAGRHGNKGVISNIVPVEDMPYTEDGRPVDIVLNPLGVPSRMNIGQILEVHLGWAA
KGVGYKIQEMLEQQREVAELREFLGRVYNTSGKKEELDELTDAEIVELAGNLQGGVPMAT
PVFDGANEDEIKDMLELAGLPRSGQAKLIDGRTGEFFHRPVTIGYMHMLKLNHLVDDKMH
ARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLQEMLTVKSDDVNGRTKI
YKNIVDGDYRMDAGMPESFKVLTREIRSLGIDVDLVEE
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atggcttatacgtttaccgagaaaaaacggattcgtaaagattttggcaagcgctctagt
gttctgaccgtcccgaacctgctggcaacgcaagtcaattcctatcaggattttctgcaa
atgggtgttgcagctgacgagcggggcagcgtgggattgcacgccgcgtttgagtcagtg
ttcccgattaaaagccataccggtatggctgaactccagtatgtgagctatcggcttggc
gtgcctacttttgacgtgaaagaatgtcaattacggggcgtcacctatgccgcaccttta
agagttaaaatgcgtctggttatttatgacaaagacgcccctgctaaacaaaaagtcgtc
aaagacattaaagagcaggaagtttacatgggtgaaatcccgttaatgacggagaaaggt
aacttcgttatcaatgggactgagcgcgttattgtgtcgcaattgcatcgctccccaggg
gttttctttgatagtgataaaggaaaaacccattcatcaggcaaaattttatataacgca
cgggtcatcccttatcgcggttcttggttggacttcgagtttgatccgaaagatgctgtc
tttgtacgtattgaccgtcgccgtaagttacctgcaaccatcctgctccgtgccttgggt
tacggcaaccaggaaatcctagaaatcttctttgataacgacgtgtttacccgtcgtaaa
gcaggctttgaactggcgctggaaccacagcggctgcgcggccaatctgtgccttttgat
attctgaataaagaaggcgaggtcatcgttgaagctgagcggcaaataacgggccgccac
attcggcagttggaaaaagccaatatgtctgcgctgtctgtgccggaagcgtatctggtt
ggtaaagtgattgcgaaagatgtcatcgataccgatacaggtgagttattggcaaatgcc
aatgatgaaatcaccagcgacattctggaaaaattcgaacgctttggtgttgatagtatt
gaaactatttatgcgaatgatttggaccatggtccttatatttctgacaccctgcgtctt
gacgaaacccgcactgacctggaagcaaaagtcgaaatttaccggatgatgcgtcccggt
gagccgccaacagaagacgcggcggaaaacctgttccagaatttattcttcactcatgat
cgctatgatttgtccaatgtcggtcggatgaaatttaaccgccgattgggtcgtgaagaa
ctggaaggcgaaggcacactttctaaagaagacatcctcgcggtaatcagtgaacttatc
tcgattcgcaatggttttggcgttgtcgatgatattgatcatttgggtaatcgacgtgtt
cgtagcgttggtgaaatggctgaaaatcaattccgcgttggtctggttcgggttgaacgt
gccgtgcgtgaacggttaagcattgctgaatcagaaggcctgatgccacagcagttgatt
aatgccaaaccggttggcgcagcgattaaagagttctttggctcaagtcagctgtcgcag
tttatggatcaaaataaccccttatcggaagtcacccataaacgtcgtgtttctgcatta
ggcccgggcggtctgactcgtgaacgtgctggttttgaggttcgtgacgtacatcccacg
cactatggccgagtctgcccaatcgagacaccggaaggtccgaatatcggcctgattaac
tcgttggcttgttatgcacgtaccaataaatacggcttcatcgaaacaccgtaccggaag
gttattgatggtaaggcaacggatgaaatcatctatttgtcggcgattgatgaaggcgaa
tacaaaattgcacaggcgacgattgcgttaaatagcgataactcaattgctgataatttg
gtgccttgtcgttatcggaatgagttttcattgacgccatctgaacaagttcagttgatg
gacgtgtcgcctcgtcaggttgtctctgtcgcggcatcattgatcccattccttgagcat
gatgatgcgaaccgggccttgatgggctcgaacatgcaacgtcaggctgttccgacactc
cgtgctgacaaaccgttagttggtaccggaatggaacgggttgtggctcaggattctggt
gtcatggtcacggcgaaacggggtggtgtggttgactccgtggatgcgagccgggtggtt
attcgtgttaatgatgacgaaaccgaaggcaatgaatccggcgttgatatttacaacctg
atcaaatacgcacgctcaaatcaaagcacctgtattaaccaacggcctattgtcaaaccg
ggcgatattattggtaaaggcgatacccttgctgatggtccgtcgaccgataaaggtgaa
ttggcattgggtcagaatattctggtcgctttcatgccgtggaatggttataacttcgaa
gattccattcttgtctctgaacgtgtcgtagaagaagatcgtttcactacgattcatatt
caggaattgaattgccttgctcgggaaacaaaactgggcacagaagaaattaccagtgat
attccaaacgtcagtgagagtgcactggccaaattggatgaatccggtattgtttatgtc
ggtgccgaagtcaaaccgggcgatattctggtgggcaaggtgacgccaaaaggcgaaacg
cagttgacaccagaagaaaaactgctgagagcgatctttggtgaaaaagcagcggatgtg
aaagattcttcacttcgagtcccttctggtacttatggcaccgtcgttgatgttcaggta
ttcacccgggatggcgtggataaagatgaacggacagatcaaatcgaaaaagcggaactt
gagaaagtctgggcggatctgaaagatcaacatcgcatcatggttgatgatgtgttttca
cgactggaacgtaatttaaccaacaaagttgctaaaaaaggcccaggcattaaaaaaggt
gacaaactgaccaagtccgtgctcaaagggcttgagcagtcacagtggttcgacttgcaa
atggagtcggatgatctgaatgccatgttggaatcggcaagtaagcaaatccagcaatac
cgaaatgatatggatgaagccttccaaatcaaaaaggacaaactgacctcaggtcatgat
ttggcacctggcgtacagcgcatggtcaaagtgttcttggcggtgaaacgtcgtatccag
ccaggcgacaaaatggcaggccgccatggtaataaaggggttatctctaacatcgttccg
gtcgaggatatgccttatactgaagatggccgtccggttgatatcgttttgaatccatta
ggcgttccatcacggatgaatatcggtcagattctcgaagtgcatttaggttgggctgcc
aaaggcgttggttacaagattcaggagatgttggaacaacaacgtgaagttgcagagcta
cgtgagttcttaggtcgtgtctataacaccagtggcaagaaagaagagctggatgaattg
acggatgcagaaattgtcgaattagcaggtaatctgcaaggtggtgtgccgatggcaacc
ccagtatttgatggtgcaaacgaagatgaaatcaaagatatgctggaactcgctggttta
cctagaagtggccaagcgaaattaattgatggtcgtaccggagagtttttccatcggcca
gtgaccattggttacatgcatatgctgaaactgaatcacttggtagatgacaagatgcat
gcgcgttcaaccggtccatacagcctcgttacccaacaaccattgggtggtaaagcccag
tttggtggtcagcgctttggtgagatggaggtttgggcattacaggcttatggtgctgcc
tataccttgcaggaaatgttgaccgttaaatcggatgacgtgaatggccgtaccaagatc
tacaaaaacatcgttgatggtgattatcggatggatgccggcatgccggaatccttcaag
gtactgacgcgcgaaattcgctcacttggtatcgatgtcgacctggtcgaagaataa
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