Methylomarinum roseum: Q9L42_006005
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Entry
Q9L42_006005 CDS
T10194
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
mech Methylomarinum roseum
Pathway
mech03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mech00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Q9L42_006005 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mech03400
]
Q9L42_006005 (recD)
Enzymes [BR:
mech01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Q9L42_006005 (recD)
DNA repair and recombination proteins [BR:
mech03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Q9L42_006005 (recD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
AAA_11
SH3_13
NAT10_TcmA_helicase
RecD_N
UvrD-helicase
SLFN-g3_helicase
AAA_22
UvrD_C
nSTAND3
T2SSE
NTPase_1
AAA_28
AAA_24
TrwB_AAD_bind
AAA_16
Motif
Other DBs
NCBI-ProteinID:
XBS21676
UniProt:
A0AAU7NXC3
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All DBs
Position
1227400..1229037
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AA seq
545 aa
AA seq
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MSSEQTCSRLDFAFARFLGGRSALSGAQREALEALAAHLSAQQASGHSCIRVDRGAKDLL
RASGLLSDSATAPLVLERDRLYTQRYWHYEQQLATQIKRLCALHFEAGDSTALIDRYFPV
SGDRPDWQKLAAEKALTQAFCIITGGPGTGKTTTVVKILGLLQALAERPLHIALAAPTGK
AAMRLQESIGASKPGLPCAEQIKDHIPEKVTTIHHLLGAQPPSPYFRHDAASPLPFDLLV
IDEASMIDLALMSKLLDALKPGARLILLGDKDQLASVESGAVLADLTASLPDHTVELRKS
HRFQGEIKALAEAVNRQQGERAWELLRQESSSTALLAGDLVTFIAAQYRRYLQLIAEGAD
FKRVLAEFSRFQALCSNRNGPRSVSDINHRVEQRLAEQGDIQPHGRWYVGRPVMVSENNA
AMQLYNGDIGLCLADAESGQLRVYFLRPDGGVKTVLPGRLPRCETVYAMTIHKSQGSEFD
QVLLVLAEQLNPVLTKELLYTGITRARSLVRVMASKSVFIEAVEQKVMRDSGLTAKLMLA
DEPAC
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcggaacaaacctgcagtcgtctcgattttgccttcgcccgctttctcggcgga
cgttccgcgctgtccggcgcccagcgggaggcgctggaggcgctagccgcgcatttgtcg
gcccagcaggcgagcggccatagttgtatccgcgtcgatcgcggcgctaaggatttgctg
cgcgcttcgggcttgctgtccgattcggccacggcgccgctggtgttggagcgggacagg
ctctatacccagcgttattggcattatgagcagcagctagcgacgcagatcaaacgtttg
tgcgccttgcatttcgaggcgggcgattcgaccgcgctgatcgatcgttattttcccgtc
tcgggtgatcggcccgattggcagaagttggcggcggaaaaagcgctgacccaggccttc
tgtatcatcaccggcgggcccggcaccggcaagaccacgacggtagtgaaaatcctcggg
ctgttgcaggccttggccgagcggccgttgcatattgcgctggcggcgccgaccgggaag
gcggcgatgcgcctgcaggagtccatcggcgcgagcaagccagggctgccttgcgcagag
cagatcaaagaccatatccctgagaaagtcacgaccatccaccatttgctgggcgcgcaa
ccaccttcgccttattttaggcatgatgctgcatcgccgctgcctttcgatctgttggtc
atcgatgaggcctcgatgattgatctcgccctgatgagtaagttgctcgacgccttgaag
ccgggagcccgactgatcttattgggggataaggatcaattggcctcggtcgagtccggc
gcagtgctggccgatctgaccgccagtctgccggatcatacggtggagctgcgcaagtcc
catcgcttccaaggcgagatcaaggcgctagccgaagcggttaatcgccaacagggcgag
cgggcttgggagttgttgcggcaagaaagttcgtcgacggcattgttggccggtgaccta
gtgacttttattgcagcccaataccgtcgatatctgcagctgattgccgaaggggctgat
tttaagcgggtgcttgcagaattcagccgctttcaggcgctgtgctccaaccgcaacggg
ccgcgctcggtgagcgatatcaatcatcgggtggagcaaaggctggccgaacagggggat
attcagccgcatgggcgctggtatgtcggcaggccggtgatggtgagtgaaaataatgcg
gcgatgcagctctataatggcgatatcggcttgtgtctggccgatgccgagtccggtcag
ttacgcgtctattttttgcgcccggatggcggcgtcaaaacggtgttgcccggtcgattg
ccgcgctgtgaaacggtttatgcgatgacgatacataaaagccaaggctcggaattcgat
caggtattgctcgtgctggccgagcaattgaacccggtgttgaccaaggagttgctctat
accggcattacccgggcgcgatccctggttcgggtcatggcctccaagtcggtttttatc
gaggctgtcgagcaaaaggtgatgcgggacagtggtttgacggcaaaattaatgttggcc
gatgagccggcgtgctga
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