Methylomarinum roseum: Q9L42_012315
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Entry
Q9L42_012315 CDS
T10194
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mech Methylomarinum roseum
Pathway
mech03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mech00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Q9L42_012315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mech03019
]
Q9L42_012315
03009 Ribosome biogenesis [BR:
mech03009
]
Q9L42_012315
Enzymes [BR:
mech01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Q9L42_012315
Messenger RNA biogenesis [BR:
mech03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Q9L42_012315
Ribosome biogenesis [BR:
mech03009
]
Prokaryotic type
rRNA helicases
Q9L42_012315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
AAA_19
Cas3-like_C_2
HEM4
Motif
Other DBs
NCBI-ProteinID:
XBS19149
UniProt:
A0AAU7NQB2
LinkDB
All DBs
Position
complement(2662123..2663859)
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AA seq
578 aa
AA seq
DB search
MPETNSTVPSFQELSLSAPVLKALESVGYETPSPIQAQIIPFVLAGRDVLGQAQTGTGKT
AAFALPILSRLDISQKNPQVLVLAPTRELAIQVAEAFQRYASKLNGFHVLPIYGGQDYST
QLRQLKRGVHVVVGTPGRVMDHMRKGTLKLDQLNTLVLDEADEMLRMGFIDDVEWILEQT
PKGRQTALFSATMPTAIRKIAQKYLDNPEQVTIKVTTTTAENIRQRYWFVSGTHKLDALT
RILEAESFDGMIIFVRTKTATVELAEKLEARGYSASAINGDMSQALRERAIDNLKNGKLD
ILIATDVAARGLDVDRITHVVNYDIPYDTESYIHRIGRTGRAGRTGDAILFVSPREKRLL
GNIERATRQKVEEMQLPSTEFINNERIKRFKQRISDTLASEELSFFIQLIEQYQLEHDVP
AVDIAAALAKLSQGDTPLLLKELPKKSRNRQEAPKGQKESGPKERQARKERSGRMAMEIF
RLEVGRNDGVKPGNIVGAIANETGIDGEHIAQIKIEENYSTVELPAGMPKELFNALKKVR
VVGRPLNISRMDKALIKKAKSKKRVGSKSRRSKNKAAD
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaaaccaattccaccgtcccttcttttcaagaactgagtttgtccgccccggta
ttaaaagctcttgaaagcgtcggttacgaaaccccatcaccgatacaggcgcaaatcatc
ccctttgtcttggccggccgcgatgtgctcggacaagcgcaaaccggcaccggcaaaacc
gccgctttcgccctccccatattgtcgcgcctggatatcagccaaaaaaacccgcaagtc
ttggtgttagcgccgacccgcgaactggcgatacaggtggccgaagcctttcaacgctac
gcctcaaaactgaacggcttccatgttttgcccatttatggcggacaggattatagcact
cagttgcggcaattgaagcgcggcgtccatgtcgtcgtcggcacgccgggccgggtcatg
gatcatatgcgcaaaggcacgttaaaattggaccagctcaacactctggtcttagacgaa
gccgatgaaatgttacgcatgggctttatcgacgatgtcgaatggatcctggaacaaacg
ccgaagggccggcaaacggctctattttcggcgaccatgccgacggccatccgtaaaatc
gcccagaaatacctggataatccggaacaagtcaccatcaaggttaccaccacgactgct
gaaaatatccgtcaacgttattggttcgtcagcggcacgcataaactagacgcattgacc
cgcattctggaagcggagagttttgacggcatgattattttcgtcagaaccaagacggcg
accgtggaactggcggaaaaactggaagcgcgcggctattcggcctcggcgatcaatggc
gacatgtcacaggcgttacgggaacgcgccatcgacaacttaaaaaacggcaaactcgat
atcttgatcgccaccgatgtcgccgcacgcggcctggatgtcgaccgaatcactcatgtc
gtcaactacgatattccttacgacaccgaatcctatatacaccgcatcggccggaccggc
cgcgccggccgaaccggggacgcaattttatttgtatcgcctcgagaaaaacgcctgctc
ggcaatatcgaacgcgccacccggcaaaaagtcgaggaaatgcaactgccttcgacggag
ttcatcaacaatgagcgcatcaaacgctttaagcaacgcatcagcgacacgctggccagt
gaagaattaagctttttcatccaactgatcgaacagtatcaacttgaacacgatgtgccg
gccgtcgatatcgccgccgccttggccaaactgtctcaaggagacacgcctctgctattg
aaagaactgccaaagaaatcgcgcaatcgccaggaagcgcctaaaggtcaaaaagaatca
ggaccgaaagagcgacaggcgagaaaggaaagaagcggccgcatggcgatggagattttt
cgtttagaggtcggtcgcaatgatggcgtcaagcctggcaatatcgttggcgccatcgcc
aatgaaaccggcatcgacggcgaacacatcgcgcaaatcaaaatcgaagagaattacagc
acggtggaactgccggccggcatgccgaaagagctgttcaacgccttgaaaaaagttcgc
gtcgtcggtcgtccgctgaacatatcgcgcatggacaaggcgttaatcaagaaggccaaa
agcaagaaacgcgtcggctcgaaatccagacgcagcaaaaacaaagcggcggattaa
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