Methylomarinum roseum: Q9L42_020600
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Entry
Q9L42_020600 CDS
T10194
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
mech Methylomarinum roseum
Pathway
mech03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mech00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
Q9L42_020600 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mech03400
]
Q9L42_020600 (sbcB)
Enzymes [BR:
mech01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
Q9L42_020600 (sbcB)
DNA repair and recombination proteins [BR:
mech03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
Q9L42_020600 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Q9L42_020600 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Q9L42_020600 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
KorB
Motif
Other DBs
NCBI-ProteinID:
XBS22714
UniProt:
A0AAU7P0D3
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All DBs
Position
unnamed2:complement(90815..92260)
Genome browser
AA seq
481 aa
AA seq
DB search
MNSILWHDYETFGSNTRFDRPSQFAAIRTDLDLNIIGDPVSVYCKPNIDRLPSMEACLIT
GISPQLAKKEGLTEVEFFRGIHHEMMEPGTTSVGYNNLAFDDELSRHGFYRNFFDPYERE
WRNGNSRWDFINVTRAFAAMRPEGINWPVDEEGRVTVKLDRLAPANGIQHLDAHDALADV
RALIELARLFKNTNPKLYEYVWSLRNKSAVQNRLKLNQVVLHISPYYGKENYNAALIMPV
ARHPTNKNAVIAINMSEDVSALQGLDSESISQRVFNKKGDGRLPVMLIQTNKCPALFSAP
ALRGEDIDRLNLRSELAQLKAQQAIVQSLDLAVLRDAFLSDPTEVGDVDGMLYGGNFFDN
EDRCTMNNLRDLSGADIAKESPVFNDPRLDELWFRFKARNHPESLTDQEQNRWREHCRNR
AIKPLNDDLSIHQLIDKIDEHLVSASGKDHDVLSRLREYLFETAGQLDIDVAKQSVSQAV
S
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgaattcaattctttggcacgactacgagactttcggctctaatactcgctttgaccgc
ccctctcaatttgccgcgatccggactgacctggatctcaatattattggtgaccctgtt
agcgtttattgcaagccgaatattgaccgattgcctagcatggaggcttgtttaattacc
gggatatctccgcaacttgccaaaaaggaaggtctgacggaagttgaatttttcaggggt
attcatcatgaaatgatggagcccggtacaacatcggttggttataataacctggctttc
gatgatgaattgagccggcacggcttttatcgtaatttcttcgatccctatgagcgcgaa
tggcgaaatggcaattcacgctgggatttcattaatgtaacccgggcattcgcagcgatg
agacccgaaggcatcaattggccggtagatgaggaaggccgggtcactgttaaacttgat
cggttggcgccagccaatggcattcagcatttggatgctcatgacgcattagctgacgtt
cgcgccttgatcgagctagcaaggctttttaagaacaccaatcctaagctatatgaatat
gtctggtcgctacgtaataaatcagctgtgcagaaccgactcaaattaaaccaagtcgtt
cttcatatctcaccttattatggcaaggaaaattataatgccgctttaataatgccagtg
gcgcgtcatccaaccaataaaaacgcagtcatagcgatcaatatgagtgaagacgtttcg
gcgctacaagggttagattctgagtcaataagtcagcgagtttttaataaaaaaggcgac
ggacgcttgcctgttatgcttattcaaaccaataagtgccctgctctattttccgcgcca
gcattaaggggagaagatattgaccggcttaatttaaggtcagagcttgctcaactcaaa
gcccaacaagcgattgtgcaaagcctggatttggcagtgttgcgtgacgccttcctttct
gatccaacagaggtcggcgatgttgatgggatgctttatggcggcaacttttttgacaat
gaagaccggtgcaccatgaacaatttacgtgatctgtcgggggcagacattgccaaggaa
tcccctgtctttaatgatcctaggttagatgagttgtggttccggtttaaagccagaaac
catccagagagcctaaccgatcaggaacaaaaccgttggcgcgagcattgtcgaaatcgg
gcgataaaaccactgaatgatgacctgtcgattcatcagttgattgacaagatcgatgag
cacttggtgtcggcatccggtaaagatcatgacgttttatctaggttgcgcgaatattta
tttgaaacagccggccaattagatatcgatgttgcaaaacaatcggtgtcgcaagcagtc
agctag
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