Methylocystis echinoides: RVU70_03690
Help
Entry
RVU70_03690 CDS
T10963
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
meci Methylocystis echinoides
Pathway
meci03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
meci00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RVU70_03690 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
meci03021
]
RVU70_03690 (rpoC)
03400 DNA repair and recombination proteins [BR:
meci03400
]
RVU70_03690 (rpoC)
Enzymes [BR:
meci01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RVU70_03690 (rpoC)
Transcription machinery [BR:
meci03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RVU70_03690 (rpoC)
DNA repair and recombination proteins [BR:
meci03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RVU70_03690 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
XCP56250
LinkDB
All DBs
Position
778918..783093
Genome browser
AA seq
1391 aa
AA seq
DB search
MNQQEVMNLFNPVVATQAFDQIRISIASPEKILSWSFGEIKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYKGVICEKCGVEVTLARVRRDRMGHISLAAPVAHIWFLK
SLPSRIGLLLDMTLKDLERILYFESYIVIDPGLTPLKERQLLSEEEYLTAQDEFGQDTFT
AMIGAEAIRRLLESMDLEGIAASLRQEIAEAKTELKPKKLAKRLKIIEAFIQSGNRPEWM
ILKEIPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKR
MLQEAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVV
GPELKLHQCGLPKKMALELFKPFIYSRLDAKGYSATVKQAKKLVEKEKPEVWDILDEVIR
EHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNILHPANGQPIIVPSQDIVLGLYYLTLERDGEPGQGMCFANQGEIEHAL
AAKAITLHTKIKGRGWTYDAAGKRVAKIYDTTPGRMMLAQLLPKHTKIPFDVVNKLMTKK
EISNMIDTVYRNCGQKETVIFCDRIMALGFREAFKAGISFGKDDMVVPETKEKIVSETRA
AAKEYEQQYNDGLITQGEKYNKVVDAWMKCTDKLAEEMMQRISAVRKDEHGRDVPINSIY
MMSHSGARGSPQQMKQLAAMRGLMAKPSGEIIESPIISNFKEGLTVLEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDSIISSTDCGSQNGIRMRAIIDAGQVVASLATRILGRT
AAEDLKAPDGRVIVPAGEMIQEWHIEPINAAGIQEVKIRSVLTCEAKNGVCAKCYGRDLA
RGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLADQSFIESNFEGTVHVRNRHV
ARNSDGDLIVMARNVAIVILGPDGAERAVNRIQYGAKLKVDEGDKVKRGQRIAEWDPYTR
PIISEVDGVIGFEDLVEGQSMSETVDESTGIAKRMVMDWRLNLRSASLKPAIVIKSADGK
IAKLQRGGDARYLLPVDSIIAVEPGGTVKAGDIVARISVESAKTRDITGGLPRVAELFEA
RRPKDHAIIAEISGTVQFGRDYKNKQRLSIVPSEEGAEPVEYLIPKGKHIHLQDGDVVEK
GDYIVDGNPAPHDILAIKGVEELAAYLVNEIQEVYRLQGVNINDKHIEVIVRQMLQKIDI
TDPGDTGFLEGEQVDHVELDEANARAIENGGKPASGTPVLLGITKASLQTRSFFSAASFQ
ETTRVLTEAAVNGKIDPLVGLKENVIVGRLIPAGTGAAMAKFRGIASGRDDLIIEQRAEA
AEPAPALPPAE
NT seq
4176 nt
NT seq
+upstream
nt +downstream
nt
atgaatcagcaagaggtcatgaatctcttcaatccggtcgtggcgacgcaggccttcgac
cagatcaggatttcgatcgccagcccggagaaaatcctctcctggtcgttcggcgagatc
aagaagcccgagacgatcaactaccgcacgttcaagcccgaacgcgacggtctgttctgc
gcgcgcatcttcgggccgatcaaggactacgagtgcttgtgcggcaagtacaagcgcatg
aaatacaagggcgtcatctgcgagaagtgcggcgtcgaagtcacgctcgcgcgcgtgcgg
cgcgaccggatgggccatatctcgctcgccgcgcccgtcgcgcatatctggttcctgaag
tcgctgccctcgcgcatcggccttctgctcgatatgacgctgaaggatctcgagcgcatc
ctctacttcgagtcctatatcgtcattgatccgggcctcaccccgctcaaggagcgccag
ctcctctcggaagaggaatatctcaccgcgcaggacgagttcggccaggacacgttcacc
gccatgatcggcgccgaggcgatccgccggctgctcgagtcgatggacctcgagggcatc
gccgcgtccctgcgtcaggagatcgccgaggcgaagaccgagctcaagcccaagaagctc
gccaagcgcttgaagatcatcgaggccttcatccagtcgggcaatcggccggagtggatg
atcctgaaggaaatcccggtcatcccgccggatctgcgtccgctcgtcccgctcgacggc
gggcgcttcgcgacgtcggacttgaatgatctctaccgccgcgtcatcaaccgcaacaac
cgcctgaagcgcttgatcgagctgcgcgcgccggacatcatcatccgcaacgaaaagcgc
atgctgcaggaggccgtcgacgcgctgttcgacaacggccgccgcggccgcgtcatcacg
ggcgccaacaagcgcccgctgaagtcgctcgccgacatgctgaagggcaagcagggccgc
ttccgccagaatctgctcggcaagcgcgtcgactattcgggccgctcggtgatcgtcgtc
ggtccggagctcaaactgcatcaatgcggcctgccaaagaagatggcgctggagctgttc
aagcccttcatctattcgcgtctcgacgccaagggctattcggcgaccgtgaagcaggcc
aagaagctcgtggagaaagagaagcccgaagtctgggacatcctcgacgaggtcattcgc
gagcatccggttctcctgaaccgcgcgccgacgctgcatcgtctcggcattcaggccttc
gagccggtgctgatcgagggcaaggcgatccagctgcatccgctcgtctgcgcggccttc
aacgccgacttcgacggcgaccagatggccgtgcacgtgccgctgtcgctcgaagcgcag
ttggaagcgcgcgtgctgatgatgtcgacgaacaacatcctgcacccggcgaatggtcag
cccatcatcgtgccgtcgcaggacattgttctgggcctctattatctgacgctggagcgc
gacggcgagccgggccagggcatgtgcttcgccaatcagggcgagatcgagcacgcgctc
gccgccaaggccatcacgctgcacacgaagatcaagggccgcggctggacctatgacgcg
gcgggcaagcgcgtggcgaaaatctacgacaccacgccgggccgcatgatgctcgcccag
cttctgcccaagcacacgaagatccccttcgacgtcgtcaacaagctgatgaccaagaaa
gagatctcgaacatgatcgacaccgtctaccgcaactgcggtcagaaggagacggtcatt
ttctgcgaccgcatcatggcgctcggcttccgcgaagccttcaaggccggcatctccttc
ggaaaggacgacatggtcgtgccggagacgaaggagaagatcgtctccgagacgcgcgcc
gccgcgaaagaatatgagcagcagtacaacgacggcctcatcacccagggtgagaaatac
aacaaggtcgtcgacgcctggatgaagtgcacggacaagctcgccgaggagatgatgcag
cgcatctccgcggtgcgtaaggacgagcacggccgcgacgtgccgatcaattcgatctac
atgatgtcgcactccggcgcgcgcggttcgccgcagcagatgaagcagctcgccgccatg
cgcggcctgatggcgaagccgtcgggcgagatcatcgagagcccgatcatctcgaacttc
aaggaagggctgacggttctcgaatacttcaactccacccacggcgcccgcaagggcctc
gcggatacggcgttgaagaccgcgaactcgggctatctcacccgtcgtctcgtcgacgtc
gcgcaggattcgatcatctcgtccacggactgtgggtcgcagaacggcatccgcatgcgc
gccatcatcgacgccggccaggtcgtcgcgtcgctggcgacgcgtatcctcggccgcacg
gcggcggaggatctcaaggcgccggacggcagggtcatcgtccccgcgggcgagatgatc
caggagtggcatatcgagccgatcaacgccgccggcattcaggaggtgaagatccgctcg
gtcttgacctgcgaggccaagaacggtgtctgcgccaaatgctatggccgcgacctcgcg
cgcggcacgcccgtcaatatgggcgaggccgtgggcgtcatcgcggcgcagtcgattggc
gagccgggcacgcagctcaccatgcgcaccttccacatcggcggcgcggcgcagctcgcg
gaccagtccttcatcgagtcgaatttcgagggcacggtgcatgtgcgcaaccgccatgtc
gcccgcaactcggacggcgacctcatcgtcatggcgcgcaacgtcgccatcgtgatcctc
gggccggacggcgccgagcgcgcggtgaaccgtatccaatacggcgccaagctgaaggtc
gacgaaggcgacaaggtcaagcgcggccagcgcatcgccgagtgggacccctatacgcgt
cccatcatcagcgaggtggacggcgtcatcggcttcgaggacctcgtcgaaggccagtcg
atgtcggagacggtcgacgaatcgaccggcatcgccaagcgcatggtcatggactggcgc
ctcaatctgcgctcggcgagcctcaagcccgcgatcgtcatcaagagcgcggacggcaag
atcgccaagctgcagcgcggcggcgacgcccgctatctgctgcctgtcgactcgatcatc
gcggtcgagcccggcggcacggtgaaggccggcgacattgtcgcgcgtatctcggtcgaa
agcgccaagacccgcgacatcaccggcggtcttccgcgcgtcgcggagctcttcgaggcg
cgccggccgaaggatcacgcgatcatcgcggagatctcgggcaccgttcagttcggccgc
gactacaagaacaagcagcgtctcagcatcgtgccgtcggaagagggcgcggagccggtc
gaatatctgatcccgaagggcaagcacattcaccttcaggatggcgacgtcgtcgaaaag
ggcgattacatcgtcgacggcaatccggcgccgcacgacatcctggcgatcaagggcgtg
gaggagcttgcggcctacctcgtcaacgagatccaggaggtctatcgtctgcagggcgtg
aacatcaacgacaagcacatcgaagtgatcgtgcgtcagatgcttcagaagatcgacatc
accgatccgggcgacaccggcttcctcgaaggcgagcaggtggatcacgtcgagctcgac
gaggcgaacgccagggcgatcgagaacggcggcaagcccgcgagcgggacgccggtgctg
ctcggcatcaccaaggcgtcgctgcagacgcgctccttcttctccgccgcctccttccag
gagacgacgcgcgtcctcaccgaggccgccgtcaacggcaagatcgacccgctggtcggc
ctcaaggagaacgtcatcgtcggccgtctcatcccggccggcacgggcgcagcgatggcc
aagttccgcggcatcgcatcgggccgcgacgacctgatcatcgagcagcgcgccgaggcg
gccgagccggccccggcgctgccgccggcggagtaa
DBGET
integrated database retrieval system
