Methylocystis echinoides: RVU70_12605
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Entry
RVU70_12605 CDS
T10963
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
meci Methylocystis echinoides
Pathway
meci03030
DNA replication
meci03430
Mismatch repair
meci03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
meci00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RVU70_12605 (holA)
03430 Mismatch repair
RVU70_12605 (holA)
03440 Homologous recombination
RVU70_12605 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
meci03032
]
RVU70_12605 (holA)
03400 DNA repair and recombination proteins [BR:
meci03400
]
RVU70_12605 (holA)
Enzymes [BR:
meci01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RVU70_12605 (holA)
DNA replication proteins [BR:
meci03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RVU70_12605 (holA)
DNA repair and recombination proteins [BR:
meci03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RVU70_12605 (holA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_delta
HP_1247_M
Motif
Other DBs
NCBI-ProteinID:
XCP54433
LinkDB
All DBs
Position
2588327..2589349
Genome browser
AA seq
340 aa
AA seq
DB search
MVAVSHRDAERFVASPPESVFLFLIHGSDAGMVRERALAIVTQRVDDRRDPFQFVELSGD
AVSADPLTLLDEANTTPLFGGRRAILVETGAKSVIPAVASLIAAPPAACTIVLTAGALKK
DAPLRKLVEGAKQGAGLECLPDTEQDIHALVDRTLLEANLVATPEARALLLAALGEDRLM
SRAELSKLVLYVHGREHVEAADVEAIVAHASSIASDRVVAAAFAGRAGETLDAYFAQGGD
AGALLFGALRYALALHRARLAMEREGGRADAGVTALYRAGFGFMHRALMEEQLKSWTSAR
LGALIEPLRDAQTRARANANIAQMEAERALWRVARAAGKR
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
atggtcgccgtctcgcaccgcgacgccgagcgcttcgtcgcgtctccgccggagagcgtc
tttcttttcctgatccacggctccgacgccggcatggtgcgagagcgggcgctcgcgatc
gtgactcagcgcgtcgacgaccggcgcgatccgtttcagtttgtcgagctctccggcgac
gccgtgtccgccgatccgttgacgctgctcgacgaagccaacaccacgccgctctttggc
ggccgccgcgccattctggtcgagacgggcgcgaaatcggtcatccccgcggttgcgtcg
ctgatcgccgcgccgccggccgcctgcacgatcgttctgaccgccggcgcgctgaaaaaa
gatgcgccgttgcgcaagctcgtggagggcgcgaagcaaggggccggactcgagtgcctc
ccggatacggagcaggacattcatgcgctggtcgaccgcacgctgctcgaagccaatctc
gtggcgacgcccgaggcgcgggcgctgctcctcgccgccctcggcgaagatcggctgatg
agccgcgccgagctctccaagctcgttctctatgtgcatggccgtgaacatgtcgaagcc
gcggatgtcgaggcgatcgtcgcccatgcctccagcatcgcctccgaccgcgtcgtggcc
gccgctttcgcgggccgcgcgggcgagacgctcgacgcttattttgcgcaaggaggcgac
gccggcgcgctgctcttcggcgccctgcgctacgctttggcgctccatcgcgcccggctc
gccatggagcgcgagggcgggcgcgccgacgccggcgtcaccgcgctctatcgcgccggc
ttcggcttcatgcatcgcgccttgatggaggagcagctcaagagctggacgtccgcccgt
ctcggcgccctgatcgagcccctgcgcgacgcccagacccgcgcccgcgccaatgcgaat
atcgcgcaaatggaggccgaacgcgcgctctggcgggtggcgagagcggcggggaagcga
tga
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