Methylocystis echinoides: RVU70_13160
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Entry
RVU70_13160 CDS
T10963
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
meci Methylocystis echinoides
Pathway
meci03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
meci00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RVU70_13160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
meci03019
]
RVU70_13160
Messenger RNA biogenesis [BR:
meci03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RVU70_13160
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
XCP54536
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Position
2713118..2714791
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AA seq
557 aa
AA seq
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MTATAEANFVFVPFGGVGEIGMNLALYGYGPPRARKWLMVDCGLGFPGADLPGIDVVFPD
IAFVEKIARDLVAICITHAHEDHIGALATLWPKLKCKVYATPFAAGLLEVRRLNEPGAPK
IDILTVQAGAVLDLEPFTVEYIAVAHSIPEANALAIRTPLGTALHTGDWKIDPEPGVGNR
IDEARLRALGDEGVDVLICDSTNILREGDSFSESDVARVLKPLIAEAPGRVLVTTFASNV
SRLRAIAEAAQACGRTVVVAGRAMDRVVQVARDCGFLDGLPGFHAPEMLPNLPREKTVVI
ATGSQGEPRAAMMRASQNDHPSIKLVSGDRVIFSSRTIPGNAREVHRVINNLCNLGVEVI
TDHDHLVHCSGHPRRGEVRQMYEWVRPKSAVPVHGEAHHLTQHVAFAKSCGVAHVVSARD
GHMVQLLPGPPAIIDEVPHGRLLKDGDVVVKEDDGAVRERNKLAFAGVVSIALAVDKKGE
LVGDPDVVFAGVPKKGKFGEEMGEVIDEALFATFEGLPRARRRDPDSVSTAIERSVRGAV
SSVWGKKPIVHVMVVSA
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcgaccgccgaagcaaatttcgttttcgtccctttcggcggcgtcggcgagatc
gggatgaatctcgccctttacggctatgggccgccgcgggcgcgcaaatggctgatggtc
gattgcggtttgggctttccgggcgccgaccttccgggcatcgacgtggttttcccggac
atcgccttcgtcgagaaaatcgccagggatctcgtcgccatctgcattacccatgcgcat
gaggaccatatcggcgcgctggccacgctctggcccaagctcaagtgcaaggtttatgcg
acgcccttcgcggcggggcttctcgaggtgcgacggctgaacgaaccgggcgcgccgaag
atcgatattctcactgtgcaggccggcgccgttctcgacctcgagccgttcacggtcgaa
tatatcgccgtggcgcattccatcccggaggccaatgcgctggccattcgcacgccgctc
ggcacggcgctgcacacgggcgattggaagatcgaccccgaacccggcgtcggcaatcgc
atcgacgaggcgcggctgcgcgcgctcggcgacgagggcgtcgacgttctcatctgcgac
tcgaccaatatcctgcgcgaaggcgacagtttctcggagagcgacgtcgcccgcgtgctg
aagccgctcattgccgaggcgccgggccgcgtgctggtgacgaccttcgcctccaacgtc
tcgcgcctgcgcgcgatcgccgaggcggcgcaagcgtgcggccgcacggtcgtcgtcgcc
gggcgcgccatggatcgcgtcgtacaggtcgcgcgcgactgcggttttctcgacggactg
ccgggttttcacgcgccggagatgctcccgaatctgccgcgcgagaaaaccgtcgtcatc
gccacgggcagccagggggagccgcgcgccgccatgatgcgcgcctcgcaaaatgatcac
ccctcgatcaagctcgtctccggcgatcgcgtgatcttctcctcgcgcaccatccccggc
aatgcgcgcgaggtgcatcgcgtcatcaataatctttgcaatctgggcgtcgaggtcatt
actgaccacgaccatctggtgcattgctcgggccatccgcgccgcggagaggtgcggcag
atgtatgagtgggtgcgcccgaaaagcgcagtgcccgtgcatggcgaggcccatcatctc
acccagcatgtcgccttcgcgaaatcctgcggagtggcgcatgtggtctccgcccgcgac
ggccacatggtgcagctcctgccggggccgcccgccatcatcgatgaagtgccgcatggc
cgcctgctcaaggatggcgacgtcgtcgtcaaggaagacgacggggcggtgcgcgaacgt
aacaagctggcctttgcgggcgtcgtgtccatcgcgctggccgtcgacaaaaaaggcgag
ctcgtcggcgatccggacgtcgtcttcgccggcgtgccaaagaaaggcaagttcggcgaa
gagatgggcgaggtcatcgacgaggcgctgttcgcgaccttcgaaggcctgccgcgcgcc
cgccgccgcgaccccgactcggtgtcgaccgcgatcgagcgctcggtgcgcggcgcggtg
agctcggtgtggggcaagaagccgatcgtgcatgtgatggtggtctcggcctga
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