Methylocystis echinoides: RVU70_14905
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Entry
RVU70_14905 CDS
T10963
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
meci Methylocystis echinoides
Pathway
meci03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
meci00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RVU70_14905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
meci03019
]
RVU70_14905
Enzymes [BR:
meci01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RVU70_14905
Messenger RNA biogenesis [BR:
meci03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RVU70_14905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Utp25_C
AAA_22
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
XCP54869
LinkDB
All DBs
Position
3039698..3041044
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AA seq
448 aa
AA seq
DB search
MTNFSDLGLAEILLRALAREGYETPTSIQAQAIPYLLQGRDLLGIAQTGTGKTAAFALPI
LERLIADRRRPAPFTARALVLAPTRELAAQIADSFRSYGQFLRPSVGVIVGGVSHRPQID
MLARGLDVLVATPGRLLDHVASGRMKLAQTEVLVLDEADHMLDLGFIIPIRQIVAKLPKK
RQTLLFSATMPKEIAGLAQDMLNDPAQVAVTPVATTAERVAQHVFLVDGGAKRDVLLELM
NDVDISRAIVFTRTKRGADRVAQHLDAAGVGAEAIHGNKSQSQRIRALDGFRKGRTRVLV
ATDIAARGIDVDGVTHVVNFELPETPEAYVHRIGRTARAGASGRAISLCDNGERPLLRQI
EKLTRQSLPVTDRRSDGERHDETAPARRGARGGAPKANGGARHAQKHPRREGPHRDGPRA
EGRRPPRSGAGQKRRAQGGTHRPHPTQG
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
gtgaccaatttttccgatcttggccttgccgagattctgcttcgcgccctcgctcgcgaa
ggctatgagaccccgacttccattcaggcccaggcgattccttatcttctgcagggccgc
gatctcctcggcatcgcccagaccggcaccggcaagacggcggccttcgccctgccgatt
ctggaacgcttgatcgccgaccggcgccggccggcgccctttaccgcgcgggcgctggtg
ctggccccgacgcgcgaactcgccgcgcagatcgccgacagcttccgttcctacggccaa
tttctgcggccgagcgtcggcgtcatcgtcggcggcgtgtcgcatcgtccccaaatcgac
atgctggcgcgcgggctggacgtgctcgtcgcgacgccgggccgtttgctcgatcatgtc
gccagcggccgcatgaagctggcgcagaccgaagtgctggttctggatgaagccgatcac
atgctggatctcggtttcatcatcccgatccgccagattgtcgccaagcttcccaagaag
cgccagacgctgttgttctccgccaccatgccgaaggagatcgccggcctcgcgcaggac
atgctgaacgatcccgcccaggtcgccgtgacgcccgtcgcgacgacggcggagcgcgtc
gcgcagcatgtgttcctcgtcgacggcggggcgaagcgggacgtgcttctcgaattgatg
aatgacgtcgacatctcgcgcgccatcgtcttcacgcgcaccaagcgtggcgcggatcgc
gtggcgcagcatctcgacgccgccggcgtcggcgcggaggcgatccacggcaacaagagc
cagagccagcgcattcgcgccctcgacggtttccgcaagggccgtacgcgcgtgctcgtc
gcaacggacatcgccgcccgcggcatcgatgtcgacggcgtgacgcatgtggtgaatttc
gaacttccggagacgccggaagcttatgtccatcgcatcggccgcacggcgcgggccggc
gcctcgggccgtgcgatttcgctttgcgacaacggcgagcggccgctgctgcgccagatc
gagaaactcacccgccagtcgctgcccgtgaccgaccgccgcagcgacggcgagcgccat
gatgagaccgccccggctcgccgcggcgcgcgcggcggcgcccccaaggccaacggcggc
gcgcgccatgcgcagaaacatcctcgccgcgaggggccgcatcgcgatggcccgcgcgcc
gaaggccgccgcccgccgcgctccggcgccggtcagaagcgccgcgcgcagggcggtacc
catcgtccgcaccccacgcaggggtga
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