Methylobacterium sp. CLZ: CLZ_05575
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Entry
CLZ_05575 CDS
T10449
Name
(GenBank) DEAD/DEAH box helicase
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mecl Methylobacterium sp. CLZ
Pathway
mecl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mecl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CLZ_05575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mecl03400
]
CLZ_05575
Enzymes [BR:
mecl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CLZ_05575
DNA repair and recombination proteins [BR:
mecl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CLZ_05575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
RecG_dom3_C
UB2H
Cas3-like_C_2
SecA_DEAD
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QIJ74097
LinkDB
All DBs
Position
complement(1236776..1240105)
Genome browser
AA seq
1109 aa
AA seq
DB search
MAKPRTAKPRDDQDAGHEAAAAPLIPTVALAIALLGLAGTARPLIHVARDGRRLDEIAAI
LWALAPERSVAVYPEWDCLPFDRASPSRGVMGARTGVLRWLTDAQAQPNILLTTAPALLQ
RVPPPETWAGAHVELRVGDALDPERLTAQLARLGYILDDRVDEPGEVALRGRTLDVFPAA
APLPCRIEHDGARITAIRSYDPVSQRSKVETERLVIDPATEIILDPDSGLSLEPFTGQEH
RLARFYPELVTVLDYVPEARLVVEDGVEERAAAFFDQIAEGREAEGLTAPDGSGRTSKPD
REPDLYLAPEAWAALIEARRLAAATGDAAEPVVGPVFARERRPEAAFAKVVRAALKAGER
VVLAGPKAPLRRLVRAASAVDERTVRLIDGWAEVEAAEPGAMLAIEAPVEAGFRVPEAGA
TVIAAADLFGHLAAGVQRRAAVLPIGEVELRVGDVAIDRDHGLCVFEGLETIRAGEADAE
DALRLRFADYAILMVPVTQADRIWRYGSEAEAVTLDRLDGGTWARRRLEAEATLAKAARA
MLKAAQERRTTRAPQIVPPEREMERFAAGFGYPLTGDQVQAVEETLADLAGPAPMDRLVC
GDVGFGKTEVALRAAAAAVFAGRQVAVMAPTTVLVRQHVETFRRRFARFGIKVAHLSRLV
PPAEAKRVKQGLADGSVRLVVGTQALAGRGVAFHDLGLAIIDEEQRFGAKTKASLRKAAG
AAHILTLSATPIPRTLQAAMVGLQSLSVIATPPAVRQPIRTVIAPFEEVTLAAALRREHR
RGGQSFVVCPRIEDIAPMAKRLGALVPGLDVVIAHGEMKPAEMDDAMVRFADGAGDVLLA
TSIIESGLDVPRANTMLVWDAERFGLAQLHQLRGRVGRGQRRGVVYLFGHPDKPLSPSTE
KRLRTLEALDRLGAGFAISARDLDLRGAGDLVGDDQSGHVKLVGLGLYQHLLQLALRAAK
GEAAEDWSPEVRIGLNGRVPADYIPEPEIRLSLYTRLLRLREAAEIDALRDEIEDRFGPL
PEPVEALFTLAALRIGCLTLGIVRLSGGPQGIAADFHPDRTMPVIPVSDDVTVRDGRIVM
RGGSEDAVERGRQAAVFLRRLEEARDRRG
NT seq
3330 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagcccaggaccgcgaagccccgagacgatcaggatgcgggtcacgaagcggct
gccgctccgctgatcccgacggtagccctggcgatcgccctgctcggcttggccggcact
gcccggccgctgatccacgtggcccgcgacgggcgccgcctcgacgagatcgccgcaatc
ctgtgggccctggctccggagcggagcgtggcggtctatcccgaatgggattgcctgccc
ttcgatcgcgcctcgccctcgcgcggggtcatgggggcgcgcacgggtgtgctgcgctgg
ctgaccgacgcccaggcgcaacccaacatcctgctcaccaccgctcccgcgcttcttcaa
cgcgtgccgccgccggagacctgggcgggcgcccatgtcgagttgcgcgttggggatgcg
ctcgatccggaacggctgacggcgcagttggcccggctcggctacatcctcgacgaccga
gtcgacgagccgggcgaggtggctttgcgcgggcggaccctcgacgtgttcccggcggcc
gcgccgcttccctgccggatcgagcacgacggcgcccgcatcaccgcgatccgctcctac
gatccggtgtcacagcgttctaaggtcgagaccgagcggctggtgatcgatcccgcgacc
gagatcatcctcgacccggattccggcctgtcgctggaacccttcaccggccaggagcac
cggctggcgcgcttctatcccgaactcgtgacggtcctcgactacgtgcccgaggcgcgc
ctcgtcgtcgaggatggtgtggaggagcgcgccgccgccttcttcgaccagatcgccgag
ggacgcgaggcggaaggcctgaccgcacccgatggaagcggacggacctcgaagcctgac
cgagagccggatctctacctcgcgcccgaggcgtgggcggcgctgatcgaggctcggcgc
ctcgccgccgcgaccggggacgcggccgagccggtggtcgggccggtcttcgcccgcgag
cgccgtcccgaggcggccttcgccaaggtcgtgcgcgcggccctcaaggccggcgagcgc
gtcgtgctcgccggtcccaaggcgccgctgcgccgcctcgtgcgggcggcctccgccgtc
gacgagcggaccgtccgcctgatcgacggctgggccgaggtcgaggcggcggagcccggc
gcgatgctggcgattgaggcccccgtcgaggcggggttccgcgtgccggaggcgggcgcg
accgtgatcgccgccgccgacctgttcgggcatctcgccgcgggcgtgcagcggcgggcc
gccgtgctgccgatcggcgaggtcgaattacgggttggcgacgtcgcgatcgaccgcgat
cacggcctctgcgtgttcgaggggctggagacgatccgcgcgggcgaggcggacgcggag
gacgccctgcgcctgcggtttgccgactacgcgatcctgatggtgccggtcacccaggcc
gaccggatctggcgctacggctcggaggccgaggccgtgaccctcgaccggcttgacggc
ggcacctgggcccggcggcgcctggaggcggaggcgacgctcgccaaggcggcgcgggcg
atgctgaaggccgcgcaggagcgccggaccacgcgcgcgccgcagatcgtgccgccggag
cgcgagatggagcgcttcgccgccggcttcggctatcccctcaccggcgatcaggtgcag
gcggtggaggagacgctggccgatctcgccggcccggcgccgatggaccggctggtctgt
ggcgatgtcggcttcggcaagacggaggtggcgctccgcgccgcggcggcggcggtcttc
gccggccggcaggtcgcagtgatggcgccgaccacggtgctggtgcgccagcatgtcgag
acgtttcggcggcgctttgcccgattcggcatcaaggtggcgcatctctcgcgcctcgtg
cctcccgccgaggccaagcgggtgaagcagggcctcgccgacggcagcgtgcgcctcgtc
gtcggcacccaggcgctcgccgggcgcggcgtcgcgttccacgatctcgggctcgccatc
atcgacgaggagcagcgcttcggcgccaagaccaaggcgagcctgcgcaaggcggcaggg
gcggcccacatcctcaccttgagcgcgacgccgatcccgcgcacgctccaggcggcgatg
gtcggcctgcagagcctgagcgtgatcgccacgcccccggcggtgcgccagccgatccgc
acggtgatcgccccgttcgaggaggtgacgctcgccgcggccctgcggcgcgagcatcgc
cggggtggccagagcttcgtggtctgcccgcgcatcgaggacatcgcgccgatggcgaaa
cgcctgggcgcactcgtgccggggctcgacgtcgtgattgcgcatggcgagatgaagccg
gcggaaatggacgatgccatggtccgcttcgcagacggcgcgggcgacgtgctcttggcc
accagcatcatcgagagcgggctcgacgtgccgcgggccaacacgatgctggtctgggat
gcggaacgcttcggcctcgcgcagttgcaccagttgcgcggccgggtcgggcgcgggcag
cggcgcggcgtcgtctaccttttcgggcatccggacaagccgctcagcccctccaccgag
aagcggctgcgcacgctggaggcgctcgaccggctcggcgctggcttcgccatctccgct
cgcgacctcgacctgcgcggggcgggcgatctcgtcggcgacgaccagtccggccacgtc
aagctcgttggcctcggcctctaccagcacctgctgcaactggcgctgcgtgccgccaag
ggcgaggccgccgaggactggagcccggaggtgcggatcggcctgaatggccgcgtgccc
gccgactacatccccgaacccgaaatccgcctcagcctctacacccgcctgctgcgcctg
cgcgaggcggccgagatcgacgccctgcgtgacgagatcgaggaccgtttcgggccgctg
ccggagccggtggaggccctgttcaccctggccgccctgcgcatcggatgcctcaccctc
ggcattgtccgcctcagcggcggtccgcagggcatcgcggcggatttccatccggacagg
acgatgccggtgattccggtctcagacgacgtcacggtgcgcgatgggcgcatcgtgatg
cgcgggggcagcgaggatgcggtggagcgcggacggcaggctgccgtcttcctgcgccgc
ctcgaagaggcgcgcgaccggcgcggctga
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