Methylobacterium sp. CLZ: CLZ_11265
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Entry
CLZ_11265 CDS
T10449
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
mecl Methylobacterium sp. CLZ
Pathway
mecl02020
Two-component system
mecl02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
mecl00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
CLZ_11265 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CLZ_11265 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mecl03021
]
CLZ_11265 (rpoN)
Transcription machinery [BR:
mecl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CLZ_11265 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
HTH_3
Arg_repressor
Motif
Other DBs
NCBI-ProteinID:
QIJ75120
LinkDB
All DBs
Position
2475420..2476955
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AA seq
511 aa
AA seq
DB search
MSLLQRLEMRQGQALVMTPQLLQAIKLLQLSQLDLTAYVDAELERNPLLERAESEGAPER
EAPEPSGEGEYEGGDGAEPEAWLASDMTQSRSEIESDLDTRLDNVFADENPVPRETGAGD
TLSLTPAPYGNAGGSFDGDLPDFESTLTAETSLREHLAAQLDLATQSPSDRLIGSFLIDA
VDDAGYLREEIDGVAERLGAPLDDVARVLKLVQTFDPPGVAARDLAECLAIQLREQDRFD
PAMQALVSRLDLVAKRDFPALRRLCGVDDEDLVEMLAEIRRLDPKPGRAFGTHAVEVLVP
DVFVRAAPDGSWLVELNSDALPRVLVNQSYYARVSKGAVADGDKAFLSECLQTANWLTRS
LEQRARTILKVATEIVRQQDAFFLHGVAHLRPLNLKTVAEAIGMHESTVSRVTSNKSIGT
SRGTLEMKYFFTAAIPGAAGAAAHSSEAVRHRIKQLVDAEAADVLSDDALVQRLRDEGVD
IARRTVAKYRESLRIPSSIDRRRAKMATAAR
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atgagtctgctgcaacggcttgaaatgcgccagggccaagccctggtgatgacgccgcaa
ctgttgcaggcgatcaagctcctgcaactatcgcagctcgatctcacagcctatgtcgat
gccgagctggagcgcaatccgcttctggagcgcgccgagagcgagggagccccggaacgc
gaggcgccggagccgtcgggcgagggtgagtacgagggcggcgacggggccgagcccgag
gcgtggctcgcctccgacatgacgcagagccgcagcgagatcgagagcgacctcgacacg
cgcctcgacaatgtcttcgccgacgagaatcccgttccgcgcgagacgggggcgggcgac
acgctctcgctgacgcccgcgccctacggcaatgccggcggcagcttcgacggcgacctt
cccgacttcgaatcgacgctcaccgccgaaacgtccctgcgtgagcacctcgccgcgcag
ctcgacctcgcgacgcagagcccgtcagaccggctgatcggcagcttcctcatcgatgcg
gtggacgatgccggttacctgcgcgaagagatcgatggcgtggccgagcggctcggtgcc
ccgctcgacgacgtcgcccgcgtcctgaagctggtccagaccttcgacccaccgggcgtg
gccgcacgcgacctcgctgaatgcctcgcgatccagctccgcgagcaggaccggttcgat
ccggccatgcaggcgctggtctcgcgcctcgacctcgtggccaaacgcgattttccggcc
ctgcgccgcctgtgcggcgtggacgacgaggacctcgtcgagatgctggccgagatccgc
cggctcgatccgaagcccggccgggccttcggcacgcacgccgtcgaggtgctggtaccc
gacgtgttcgtcagggccgccccggacggctcctggctggtggagctgaactcggacgcg
ctgccgcgggtcctggtcaaccaaagctactatgcccgtgtctccaagggcgccgtggcg
gacggcgacaaggcgttcctgtccgagtgcctgcagaccgccaactggctcacccgcagc
ctggagcagcgggcgcgcacgatcctcaaggtcgccaccgaaatcgtgcgccagcaggat
gccttcttcctgcacggcgtcgcccatctgcgcccgctgaacctcaagacggttgccgag
gcgatcggcatgcacgaatcgaccgtctcgcgggtcacctctaacaagtcgatcggcacc
agccgcggcaccctggagatgaagtacttcttcaccgccgcgattccgggcgccgcgggc
gcggcggcccattcctcggaggccgtgcgccaccgcatcaagcaactggtggatgcggaa
gccgctgacgtcctgtccgacgacgcgctggtgcagcgcctgcgcgacgagggtgtcgac
atcgcccgccgcaccgtcgcgaagtaccgcgagtcgctgcgcattccctcgtcgatcgac
cgccgccgcgcgaaaatggcgactgccgcccgatga
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