Methylobacterium sp. CLZ: CLZ_11685
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Entry
CLZ_11685 CDS
T10449
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mecl Methylobacterium sp. CLZ
Pathway
mecl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mecl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLZ_11685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mecl03019
]
CLZ_11685
Enzymes [BR:
mecl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CLZ_11685
Messenger RNA biogenesis [BR:
mecl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CLZ_11685
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Utp25_C
AAA_30
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QIJ75193
LinkDB
All DBs
Position
complement(2566116..2567648)
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AA seq
510 aa
AA seq
DB search
MTQFTDFGLAQPVLRALEEAGYVTPTPIQSQAVPPAMEGRDLCGIAQTGTGKTAAFALPI
LHRLSLENRRAPRRGCRVLVLSPTRELASQIAESFSDYGRHLPYTNTVVFGGVNISRQER
AIAPGVDILVATPGRLIDLVDRRALTLEGVEILVLDEADQMLDLGFIHALKRIVKMLPAR
RQSLFFSATMPKNIAGLADQYLSNPVQVAVTPVATTAERVDQQVIFCHTGAKQALLNHVL
RDPKIERVLVFTRTKHGADRVVRGLDKAGIVGAAIHGNKSQPQRERALAAFRDGSCRVLV
ATDIAARGIDVEGVTHVVNYDLPNVPESYVHRIGRTARAGAEGQAISFCNDEERAYLRDI
ERTTRQKVPVAGFPEGFVPPSRQEAQDTAAEEARRPPRQPQGRPGHRQGRPGGGRGQGGE
GRGEPRAHEARGGRPGGQPGHRQDQRSGAPRPDGQRQDQRRPERAGEGRPQGARPQGARP
QGGRPNDGRPARSGSEGGRAIGWLDRAPRS
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
ttgacccaattcactgatttcggcctcgctcagcccgtgctccgcgcgctggaagaggcc
ggctacgtcacgccgaccccgatccagtcgcaggcggttccgccggcgatggagggccgc
gacctctgcggcatcgcccagaccggcaccggcaagaccgccgccttcgccctgccgatc
ctccaccgcctgtcgctcgagaaccgccgcgcgccgcgccgcggttgccgcgtgctcgtg
ctctcgccgacccgcgagctggcgagccagatcgctgagagcttctccgattatggccgg
cacctgccctacaccaacaccgtcgtgttcggcggcgtgaacatcagccgccaggagcgg
gcgatcgcgccgggcgtcgatatcctcgtcgccacgccgggccggctcatcgacctcgtc
gatcgccgggcgctgacgctggagggcgtcgagatcctcgtcctcgacgaggccgaccag
atgctcgacctcggcttcatccacgcgctcaagcggatcgtgaagatgctgccggcgcgc
cgccagagcctgttcttctcggcgacgatgccgaagaacatcgccggcctcgctgaccag
tacctgtccaacccggttcaggtggcggtcacacccgtggcgacgaccgccgagcgggtc
gatcagcaggtcatcttctgccacaccggcgcgaagcaggccctgctcaaccacgtcctg
cgcgatccgaagatcgagcgcgtgctcgtcttcacccgcaccaagcacggcgcggaccgg
gtcgtgcgcggcctcgacaaggccggcatcgtcggcgccgccatccatggcaacaagagc
cagccgcagcgtgagcgggcgctcgccgccttccgcgacggctcctgccgtgtgctggtc
gccaccgacatcgccgcccgcggcatcgacgtcgagggtgtaacccacgtcgtgaactac
gacctgccgaacgtgccggagagctacgtccaccgcatcggccgcacggctcgtgccgga
gcggaaggtcaggcgatctcgttctgcaacgacgaggagcgcgcctacctccgtgacatc
gagcgcaccacgcgccagaaggtgccggtcgccggcttccccgagggcttcgtgccgccg
agccgccaggaggcgcaggacaccgccgccgaggaggcgcgccgtccgccgcgccagccg
cagggtcgtcccggccatcgccagggtcgtccgggcggcggtcgcggccagggtggcgag
ggccgcggcgagccgcgcgcccacgaggcgcgcggcggccgtcccggtggtcagccgggc
caccgtcaggaccagcgctccggcgccccgcgtcccgacggtcagcggcaggatcagcgc
cgccccgagcgcgccggcgagggtcgtccgcagggggcccgcccgcaaggcgcgcgcccc
cagggcggccgcccgaacgatggtcgccccgcgcgctccggcagcgagggcggtcgcgcc
atcggctggctcgaccgtgcgccgcgttcctga
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