Methylobacterium sp. CLZ: CLZ_17565
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Entry
CLZ_17565 CDS
T10449
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mecl Methylobacterium sp. CLZ
Pathway
mecl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mecl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLZ_17565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mecl03019
]
CLZ_17565
03009 Ribosome biogenesis [BR:
mecl03009
]
CLZ_17565
Enzymes [BR:
mecl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CLZ_17565
Messenger RNA biogenesis [BR:
mecl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CLZ_17565
Ribosome biogenesis [BR:
mecl03009
]
Prokaryotic type
rRNA processing factors
CLZ_17565
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QIJ76239
LinkDB
All DBs
Position
complement(3822125..3825310)
Genome browser
AA seq
1061 aa
AA seq
DB search
MANNKMLIDAMHPEETRVVTVQGSRVEEFDFEAANRRPLRGNIYLAKVTRVEPSLQAAFV
EYGGNRHGFLAFNEIHPDYYQIPMADRLALIEAEAREEEEHREREERRPPRGRRSRGRRA
EARGARSGDTVKSQEAVSETVSDADAIPGEGQAADAPTPEAIEAVRAALVEERPEGDEVP
AAVEPGGDASASLPEAALEPGASAGDTSAEGAVEGSAEAEAPAALEPSDIAALSEAPNPP
VDAEASDAASAEAETVEPQPVAASAPVSEAEQAEAESDDDTQDSDAEDSDDEDADDEDSE
DDESDDDEDEDDDESDDEDSDDEEEDEESEDGERRVAQVGGSGDALAEIPERPRAYRRHY
KIQEVIKRRQIILVQVVKEERGTKGAALTTYLSLAGRYSVLMPNTGRGGGISRKITSAAD
RKRLKEVVADLDVPDGMGIILRTAGASRTKPEIKRDFEYLMRLWESVRELTLSSTAPALV
YEEGSLIKRAIRDLYNKDLDEVLVSGEDAYREAKDFMRMLMPGQSKVVKPYRDPTPIFAR
YGVEQQLDAMFSTHVALRSGGYLVINPTEALVSIDVNSGRATREHDIEDTALKTNLEAAE
EVARQVRLRDLAGLVVIDFIDMEEKRNNRAVEKRLNEALKNDRARIQVGRISPFGLLEMS
RQRIRTGVLESSSIPCAHCGGSGFVRATSSVALHILRSIEEVLLKSASHNVVLRTRTETA
LYILNQKRAHLYDLEQRFQVAITISADDRLVATSAFQLERGEPAVKHEGPVTGVRAVAIS
PVYEAEEFEDDIVETEEAEEAEITAEAETETEGAAEERSAADASEEGGGRRRRRRRRRGG
RSSGEGEVRARQDNGDDNGDEAGDDNGADPEDGDEAPESEAQVAEAAVGAEAERDETASE
AAEAGDDDGNGRRRRRGRRGGRGRGRTDRNGSSDADQDSEADEARSAEASEAVSEAHPEE
TASDALPVGPEEPVSDADVTTVSLAAENGSAAERPPVAPAPEVEPIRADAVAEAATEAAA
PVPAAPEPAPEPVAVVLTPPDPNRPKRAGWWSRTKAALGGE
NT seq
3186 nt
NT seq
+upstream
nt +downstream
nt
atggccaacaacaagatgctcatcgatgcgatgcatccggaggagacccgggtcgtcaca
gttcaaggctcgcgggtcgaggaatttgatttcgaggcggccaaccgccggcctctgagg
ggcaacatctatctcgccaaggtgacccgcgtggagccctcgctccaggcggccttcgtc
gagtacggcggcaaccgccacggcttcctcgccttcaacgagattcaccccgactactac
caaatcccgatggccgaccgcctcgcgctgatcgaggccgaggcgcgcgaggaggaggag
caccgcgagcgcgaggagcgccggcccccgcgcggccgccgctcgcgcggtcgccgggcc
gaggcccgcggcgcccgcagcggcgacacggtgaagtcgcaggaggcggtctcggagacc
gtgtccgacgcggatgcgatccccggcgagggccaggctgccgacgcgccgacgccggag
gcgatcgaggcggtgcgtgccgccctcgtcgaggagcggcccgagggcgacgaggtcccc
gcggcggtcgagcccggcggcgacgcctcggcgagcctgcccgaggccgcgctggagccc
ggcgcgtccgccggcgacacgtctgccgaaggagctgtcgaaggatcggccgaggccgag
gcgccggccgcgctcgagccctccgacatcgccgcgctctccgaggcgccgaacccgccc
gtcgacgcggaagcctccgacgccgcgtccgccgaggcggagacggtcgagcctcagccc
gtcgccgcctcggcgccggtctccgaggccgagcaggccgaagcggagtccgacgatgat
acccaggattcggacgccgaggattcggacgacgaggacgcggacgatgaggattccgag
gacgacgagtccgacgatgacgaggatgaggacgacgacgagtccgatgacgaggattcg
gacgacgaggaagaggacgaggaatccgaggacggcgagcgccgggtcgcgcaggtcggc
ggttcgggcgacgcgctcgccgagatccccgagcgtccgcgcgcctatcgccgccactac
aagatccaggaggtgatcaagcgccgccagatcatcctcgttcaggtcgtcaaggaggag
cgcggcaccaagggcgcggcgctcaccacctacctgtcgctcgccggccgctactcggtg
ctgatgcccaacaccggccgcggcggcggtatctcccgcaagatcacctcggccgccgac
cgcaagcgcctgaaggaggtcgtggccgatctcgacgtgccggacgggatggggatcatc
ctgcgcacggccggcgcctcgcgtaccaagcccgagatcaagcgcgacttcgagtacctg
atgcgcctgtgggagagcgtgcgcgagctgacgctgtcctccaccgccccggcgctggtc
tacgaggagggctcgctgatcaagcgggcgatccgcgacctctacaacaaggatctcgac
gaggttctggtctcaggcgaggacgcctaccgcgaggccaaggacttcatgcggatgctg
atgcccggccagtcgaaggtggtgaaaccctaccgcgacccgacgccgatcttcgcccgc
tacggcgtcgagcagcaactcgacgcgatgttctcaacccacgtggcgctccgctcgggc
ggctacctcgtcatcaacccgaccgaggcgctggtctcgatcgacgtgaactcgggccgc
gccacccgcgagcacgacatcgaggacaccgcgctcaagacgaacctcgaggcggcggaa
gaagtcgcccgccaggtgcgcctgcgcgatctggccggcctcgtcgtgatcgacttcatc
gacatggaggagaagcgcaacaaccgggcggtggagaagcgcctgaacgaggcgctgaag
aacgaccgggcgcgcatccaggtcgggcggatctcgcccttcggcctcctggagatgagc
cgccagcgcatccgcaccggcgtgctcgaatcctcctccatcccctgcgcccattgcggc
ggttcgggcttcgtgcgggcgacctcctccgtggcgctgcacatcctgcgctcgatcgag
gaggtgctgctcaagtcggcgagccacaacgtcgtgctgcgcacccgcaccgagaccgcg
ctctacatcctcaaccagaagcgggcacatctctacgacctggagcagcgcttccaggtg
gcgatcaccatctccgccgacgaccggctcgtggcgacttcggccttccagctcgaacgc
ggcgagccggcggtgaagcacgagggcccggtgacgggcgtgcgcgcggtggcgatctcg
ccggtctacgaggctgaggagttcgaggacgacatcgtcgagaccgaggaggccgaggag
gccgagatcacggccgaagccgagaccgagacggagggcgccgccgaggagcgctcggcc
gccgacgcctccgaggagggcggcggccgccgccgccgccgccgccgccgccgcggcggg
cgctcctccggcgagggcgaggtccgcgcgcgtcaggacaacggcgacgacaacggggac
gaggccggcgacgacaacggagccgatcccgaggacggcgacgaggctcccgaatccgag
gcgcaggtcgccgaggcggccgtcggcgccgaggctgagcgggacgagaccgcgtcggag
gctgccgaggccggcgacgacgacggcaacggacgccgccgccgccgcgggcgccggggc
ggccgcggccgcggccggaccgaccgtaacggttcctcggacgcggatcaggattccgag
gccgacgaggcgcggtcggcggaggcctccgaggccgtctccgaggcgcatcccgaggag
accgcctccgacgcccttccggtcggccccgaggagccggtcagcgacgccgacgtgacc
accgtctcgctcgccgccgagaacggcagcgccgccgagcggcccccggtcgctcccgcg
ccggaagtcgagccgatccgggcggatgccgtcgcggaggccgcgaccgaggcggcggcc
cccgtcccggcggcgccggagccggcgcccgagcccgtcgcggtggtgctgaccccgccc
gatccgaaccgcccgaagcgggccggctggtggtcgcgcaccaaggcggcgctcggcggg
gagtaa
DBGET
integrated database retrieval system
