Methylobacterium sp. CLZ: CLZ_19875
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Entry
CLZ_19875 CDS
T10449
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
mecl Methylobacterium sp. CLZ
Pathway
mecl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mecl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLZ_19875 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mecl03019
]
CLZ_19875 (pnp)
03016 Transfer RNA biogenesis [BR:
mecl03016
]
CLZ_19875 (pnp)
Enzymes [BR:
mecl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
CLZ_19875 (pnp)
Messenger RNA biogenesis [BR:
mecl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CLZ_19875 (pnp)
Transfer RNA biogenesis [BR:
mecl03016
]
Prokaryotic type
tRNA degradation factors
CLZ_19875 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_RRP5
KH-I_KHDC4-BBP
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
QIJ76635
LinkDB
All DBs
Position
complement(4309281..4311518)
Genome browser
AA seq
745 aa
AA seq
DB search
MFDVQREELIWGDRKLVLETGKTARQADGAVVATYGETTVLATVVAAKEPKAGIDFMPLT
VNYQERAYAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVEGWRNDTQVVVTVLSH
DLENDPDIVSMVAASAALTLSGVPFTGPIGAARVGYLNGGYKLNPLVTEIAESTLDLVVA
GTQDAVLMVESEAKELSEDVMLGAVMFGHKHFQPVIEAIIRLAEKAAKEPRDFSPPENAD
VEKAVLDICESELRDAYKITVKQDRYKAVDAVKAKVVTALCPAEGEQKFSPEKVKAAFKE
AQSKVVRWNILDTGSRIDGRDVKTVRPIVSEVGVLPRAHGSSLFTRGETQALVVATLGTG
EDEQFIDALEGTYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPVLPPAH
EFPYTIRVVSEITESNGSSSMASVCGGSLSLMDAGVPLRRPVAGIAMGLILEGERFAVLS
DILGDEDHLGDMDFKVAGTDEGITSLQMDIKIAGITEEIMRVALAQAKDGRAHILGEMAN
ALTAARPELGEYAPRIETMQIPTDKIRDVIGTGGKIIREIVEKTGAKINIEDTGVVKIAS
SDGKAIKAAYNWIRSIVAEPEAGTIYDGTIVKIMEFGAFVNFFGAKDGLVHISELAAQRV
AKVGDVVKEGQKVKVKFLGADERGKIRLSMKVVDQETGEDITEKLKAERAERGEPEREER
SDRGDRGDRGPRRDRGERRRESSGE
NT seq
2238 nt
NT seq
+upstream
nt +downstream
nt
atgttcgacgtacaacgtgaagagctgatctggggcgaccgcaagctggtcctcgagacc
ggcaagaccgcccgtcaggcggacggtgccgtggtcgccacctatggcgagaccaccgtg
ctggccaccgtggtcgcggccaaggagcccaaggccggcatcgacttcatgccgctgacc
gtgaactaccaggagcgcgcctacgccgccggccgcatccccggcggctacttcaagcgc
gagggccgtccctccgagaaggagaccctggtctcccgcctgatcgaccgcccgatccgt
ccgctcttcgtcgagggctggcgcaacgacacccaggtcgtcgtcaccgtcctctcccac
gacctcgagaacgatcccgatatcgtctcgatggtggcggcctcggccgcgctcacgctc
tccggcgtgccgttcacgggcccgatcggcgccgcccgcgtcggctacctcaacggcggc
tataagctgaacccgctggtgaccgagatcgccgaatcgaccctcgacctcgtcgtcgct
ggcacccaggacgcggtgctgatggtggagtcggaggccaaggagctctccgaggacgtg
atgctcggggccgtgatgttcggccacaagcacttccagccggtcatcgaggcgatcatc
cgcctggccgagaaggccgccaaggagccgcgcgacttctccccgcccgagaacgccgac
gtcgagaaggccgtcctcgacatctgcgagtcggagttgcgcgacgcctacaagatcacg
gtcaagcaggaccgctacaaggctgtcgacgccgtgaaggcgaaggtggtcaccgccctc
tgcccggccgagggcgagcagaagttctcgcctgagaaggtcaaggcggccttcaaggag
gcccagtcgaaggtggtccgctggaacatcctcgacacgggttcccgcatcgacggccgc
gacgtgaagacggtgcgcccgatcgtctcggaagtcggcgtgctgccgcgtgcccacggc
tcgtcgctgttcacccgcggcgagacccaggcgctggtcgtggccacgctcggcaccggc
gaggacgagcagttcatcgacgcgctggaggggacctacaaggagcgcttcctgctccac
tacaacttccctccctactccgtcggtgagaccggccgcatgggttcgcccggccgccgt
gagatcggccacggcaagctcgcctggcgcgcgatccggcccgtgctgccgccggcccac
gagttcccgtacacgatccgcgtggtctccgagatcaccgagtcgaacggctcctcctcg
atggcctccgtctgcggcggctcgctgtcgctgatggatgcgggcgtgcccctgcgccgt
ccggtggccggcatcgccatgggcttgatcctggaaggcgagcgcttcgcggtgctctcc
gacatcctcggcgacgaggaccatctcggcgacatggacttcaaggtggccggcacggac
gagggcatcacctcgctccagatggacatcaagatcgccggcatcaccgaggagatcatg
cgggtcgcgctggctcaggccaaggacggccgcgcccacatcctcggcgagatggccaac
gcgctgaccgcggcccgtcccgagctcggcgagtacgcgccgcgcatcgagacgatgcag
atccccaccgacaagatccgcgacgtgatcggcaccggcggcaagatcatccgcgaaatc
gtcgagaagaccggcgccaagatcaacatcgaggataccggcgtcgtgaagatcgcctcc
tccgacggcaaggcgatcaaggcggcctataactggatccgctccatcgtcgccgagccc
gaggccggcacgatctacgacggcacgatcgtcaagatcatggagttcggcgccttcgtg
aacttcttcggcgccaaggatggcctcgtccacatctccgagctggccgcccagcgcgtc
gccaaggtcggcgacgtcgtgaaggagggccagaaggtcaaggtgaagttcctcggcgcc
gacgagcgcggcaagatccgcctgtcgatgaaggtcgtcgatcaggagacgggcgaggac
atcaccgagaagctgaaggccgagcgcgcggagcgcggcgagccggagcgcgaggagcgc
agcgaccggggtgatcgtggcgaccgcggcccccgccgcgaccgcggcgagcgtcgccgg
gagtcgtcgggcgagtaa
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