Methylobacterium sp. CLZ: CLZ_20530
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Entry
CLZ_20530 CDS
T10449
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mecl Methylobacterium sp. CLZ
Pathway
mecl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mecl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CLZ_20530 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mecl03400
]
CLZ_20530 (mfd)
Enzymes [BR:
mecl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CLZ_20530 (mfd)
DNA repair and recombination proteins [BR:
mecl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CLZ_20530 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
Cas3-like_C_2
AAA_16
SecA_DEAD
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QIJ76757
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All DBs
Position
4459144..4462740
Genome browser
AA seq
1198 aa
AA seq
DB search
MAKPQPKPPAPAPKPQTARFALPKSAPLTKALDAIKRGDSPTLASVPDGFDALVAADLAR
ALSGSFEGPAVLVHVARDSGRSNAFQNALKFVAPEIEAMSFPAWDCQPYDRVSPNAAIAA
QRMTALSRLTRSRSSEEKPRILCTTVNALVQRVPPRARVAVETFSAAIGNVVPMDKVVAW
VEANGFLRTGTVRDTGEYAVRGGILDLSPPGLPNPIRLDFFGDTLESIRAFDPETQRTVG
SLRSLDLVPMSEVQLTTETIRRFRQGYLSSFGAATRDDRLYETVSEGRRYAGVEHWMPLF
YDGLDTLFDYLGDVPMLFDPQVEEAASERLSLIQDYFQAREAALKNPQSGVAPYKPLPPR
ALYLTPNEWKGKVEAGTVARLTPFAQPDSDERAVIDCGARAGRNFAPERADEAASVFDAA
VAHIRDLQASGHHVILGSWSDGSRDRLCGVLTDHGLKKPIEINTFTAVNALKRGTDVAVA
VWGLEAGFTLDKLAVVAEGDILGDRLVRQKRKSKRPQDIILEVQALQPGDLVVHADHGIG
RFVGLKTITAAGAPHDCLELQYAGGLLLLPVENIELLTRYGSEDSEVALDRLGGGAWQAR
KAKMKRRILEMAGELIKVAAARFVKPAPSLKAPEGLYEEFAARFAFQETEDQANAIDAVL
DDLNAGRPMDRLVCGDVGFGKTEVALRAAFASAISGKQVAVVVPTTLLARQHYRTFAERF
KGLPINVAQLSRFVSAGDQRQTRAGLAEGKVDIVVGTHALLAKNVAFKDLGLIIVDEEQH
FGVAHKERLKALQADVHVLTLSATPIPRTLQLAMTGVRELSIIATPPVDRLAVRTFVTPF
DPLLIREALLRERYRGGQAFYVVPRIEDLAEVKRFLDQEMPEVTVAVAHGQMAAGQLEDV
MTAFYEGKYDVLLSTTIVESGLDIPTANTLIVHRADMFGLAALYQLRGRVGRSKARAYAL
FTTPANRQLTTQAEQRLKVLQSLDTLGAGFQLASHDLDIRGAGNLLGDAQSGHIKEVGYE
LYQQMLEDAVTALKAGIEEPVEEAWSPTIALGAPVTIPEDYVEDLTVRLGLYRRLSTLEN
DAEMESFGAELIDRFGPLPPEVEQLLKIVTIKILCREANVEKVEAGPKGVVVHFREKSFA
NPQGLAAMVVEQGSFAKVRPDMSVVFIRELDTVPKRLKETTQIMRGLVTIAKRAKKAA
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
atggccaaaccccagcccaagccgcccgctcccgctccgaagccgcagaccgcccgcttc
gccctgccgaaatcggcgccgctgaccaaggcgctcgatgcgatcaagcgtggcgacagc
ccgacgctggcctccgtccccgacggcttcgacgcgctggtggcggccgacctcgcccgc
gcactgtcgggcagcttcgaggggccggcggtgctggttcatgtcgcgcgggattccggg
cgttccaacgccttccagaacgcgctcaaattcgtcgcccccgaaatcgaggcgatgagc
ttcccggcctgggactgccagccctacgatcgcgtctcgcccaatgccgcgatcgccgcg
cagcgtatgaccgcgctctcacggctgacccgctcgcgctcctcggaggagaagccgcgc
atcctctgcaccacggtcaacgccctggtgcagcgggtgccgccccgcgctcgggtcgcg
gtcgagaccttttcggcggcgatcggcaacgtggtgccgatggacaaggtggtggcctgg
gtcgaggccaacgggtttctgcgcacggggaccgtgcgggataccggcgaatacgccgtg
cgcggcggcatcctcgatctctcgccgccgggcctgccgaacccgatccgcctcgacttc
ttcggcgacaccctcgaatcgatccgcgccttcgatccggagacgcagcgcacggtgggt
tcgctccgctccctcgacctcgtgccgatgagcgaggtgcaactcaccaccgagacgatt
cggcgcttccgccagggctacctgtcgagcttcggcgcggcgacccgcgacgaccggctc
tacgagacggtgagcgagggacggcgctatgccggcgttgagcactggatgccgctgttc
tacgacggcctcgacacgctgttcgattatctcggcgacgtgccgatgctgttcgacccg
caggtcgaggaggcggcgtccgagcggctctcgctgatccaggattatttccaggcccgc
gaggcggcgctgaagaacccgcaatcgggggtggcaccctacaagccgctgccgccgcgc
gcactctacctcacccccaacgagtggaagggcaaggtcgaggccggcacggtggcgcgg
ctcacccccttcgcccagccggattcggatgagcgggcggtgatcgattgcggcgccagg
gccggccgcaacttcgcgcccgaacgggcggacgaggcagccagcgtgttcgacgccgcg
gtggcgcatatccgcgatctccaggcatccgggcatcacgtgatccttggatcctggtcc
gacggttcccgcgaccggctctgcggcgtgctgaccgaccacggcctcaagaagccgatc
gaaatcaacaccttcacggccgtgaacgcgctcaagcgtggcaccgatgtggcggtcgcg
gtctgggggctggaggcgggcttcaccctcgacaagctggcggtggtggccgagggcgac
atcctcggcgaccgcctggtgcgccagaagcgcaagtccaagcggccccaggacatcatc
ctggaggtgcaggcgctccagcccggcgacctcgtggtccatgccgatcacggcatcgga
cgcttcgtcggtctcaagaccatcaccgcggccggtgcgccgcacgattgcctggaactg
caatatgccggcgggctgctgctgctgccggtggagaatatcgagcttctgacccgctac
ggctcggaggattcggaggtcgcgctcgaccgcctcggcggcggggcgtggcaggcccgc
aaggccaagatgaagcgccgcatcctcgagatggcgggcgaactcatcaaggtcgctgcc
gcgcgcttcgtgaagcccgcgccctcgctcaaggcgccggagggcctctacgaggagttc
gccgcccgcttcgccttccaggagaccgaggatcaggccaacgccatcgacgcggtgctc
gacgacctcaatgccgggcggccgatggaccgcctcgtctgcggcgatgtcggcttcggc
aagaccgaggtggcgctccgcgcggccttcgcctcagcgatctcgggcaagcaagtcgca
gtggtggtgccgacgacgctgctcgcgcgccagcactaccggacgttcgccgagcgcttc
aaaggtctgccgatcaacgtcgcccagctctcgcgcttcgtctcggccggggaccagcgc
cagacccgcgcggggcttgccgagggcaaggtcgacatcgtggtcggcacccatgcgctc
ttggccaagaacgtcgctttcaaagatctcggcctcatcatcgtcgacgaggagcagcat
ttcggcgtcgctcacaaggagcggctgaaggcgctccaggccgacgtccacgtgctgacg
ctctcggccaccccgatcccgcgcacgctgcaactcgccatgacgggcgtgcgcgaactc
tcgatcatcgccacgccgccggtggatcgtctggccgtgcgcaccttcgtgacgccgttc
gacccgctgctgatccgcgaggcgctgctgcgcgagcgctaccgcggtggacaggccttc
tacgtggtgccgcgcatcgaggatctggcagaggtcaagcgcttcctcgatcaggagatg
ccggaggtcaccgttgcggtcgcccacggccagatggcggcgggccagctcgaggacgtg
atgaccgcgttctacgagggcaagtacgacgtgctgctctcgaccaccatcgtcgaatcc
ggcctcgacatcccgacggccaacacgctgatcgtgcaccgggccgacatgttcgggctg
gccgcgctctaccagctccgcgggcgcgtcggccgctccaaggcgcgggcctatgctctg
ttcacgacgccggccaaccgtcagctcaccacccaggccgagcagcggctcaaggtgctc
cagagcctcgacacgctcggcgccggcttccagctcgcctcccacgatctcgacatccgc
ggtgccggcaatctgctcggcgacgcccagtccggccacatcaaggaagtgggctacgaa
ctctaccagcagatgctggaggacgccgtcaccgcgctgaaagccgggatcgaggagccg
gtggaggaggcgtggtcgccgaccatcgcgctcggcgcccccgtcacgatcccggaggat
tacgtcgaggatctcaccgtccggctcggcctctaccgccgcctctccacgctggagaac
gacgccgaaatggagagcttcggggccgagctgatcgaccgcttcgggccgctgccgccg
gaggtggagcagctcctgaagatcgtgaccatcaagatcctgtgccgcgaggccaatgtc
gagaaggtcgaggccgggccgaagggcgtcgtggtccacttccgcgaaaagtccttcgcc
aacccgcaggggctggccgccatggtcgtggagcagggctccttcgccaaggtccgtccc
gacatgagcgtcgtgttcatccgcgaactcgacaccgtgcccaagcgcctgaaagagacc
acgcagatcatgcgcggcctcgtgaccatcgccaagcgggcgaagaaggcggcgtga
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integrated database retrieval system
