Methylosinus sp. C49: MSC49_03720
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Entry
MSC49_03720 CDS
T09855
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mecq
Methylosinus sp. C49
Pathway
mecq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mecq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MSC49_03720 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mecq03021
]
MSC49_03720 (rpoC)
03400 DNA repair and recombination proteins [BR:
mecq03400
]
MSC49_03720 (rpoC)
Enzymes [BR:
mecq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MSC49_03720 (rpoC)
Transcription machinery [BR:
mecq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MSC49_03720 (rpoC)
DNA repair and recombination proteins [BR:
mecq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MSC49_03720 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
ApbA_C
YnfE
Motif
Other DBs
NCBI-ProteinID:
BBU60437
UniProt:
A0A679EZX2
LinkDB
All DBs
Position
complement(393352..397542)
Genome browser
AA seq
1396 aa
AA seq
DB search
MNQQEVMNLFNPVVQPQAFDQIQISIASPEKILSWSFGEIKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYKGVICEKCGVEVTLARVRRDRMGHISLAAPVAHIWFLK
SLPSRIGLLLDMTLKDLERILYFESYIVIDPGLTPLKERQLLTEDEYLRAQDEYGQDHFT
AMIGAEAIRKILESMDLEGIAARLRTEIAEATTELKPKKLAKRLKIIEAFIQSGNKPEWM
ILKEVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKR
MLQEAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVV
GPELKLHQCGLPKKMALELFKPFIYSRLDAKGHSATVKQAKKLVEKEKPEVWDILDEVIR
EHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNILHPANGQPIIVPSQDIVLGLYYLSLERDGEPGQGMMFADQGEIEHAL
AAKSITLQTKIKGRAWTYNEKGERVSKIFDTTPGRLILGQLLPRNPKIPFDAANRLMTKK
EISNMIDTVYRNCGQKETVIFCDRIMALGFREAFKAGISFGKDDMVIPETKERIITETRS
ATKEYEQQYNDGLITQGEKYNKVVDAWMKCSEKLAEEMMIRISTVRKDEHGRDLPINSIY
MMSHSGARGSPAQMKQLAAMRGLMTKPSGEIIETPIISNFKEGLTVLEYFNSTHGSRKGL
SDTALKTANSGYLTRRLVDVAQDSIITTVDCGTEKGIRMRAIIDAGQVVASLTSRILGRT
AAEDLRDQQGKIIVPNGEMIQEWHIEPINAAGIQEVKIRSVLTCESKNGVCGKCYGRDLA
RGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLADQSFIESNFEGTVHIRNRHV
ARNSDGDLIVMARNVAAVIVGPDGVERAVNRIQYGARLKVDEGDKIKRGDRIAEWDPYTR
PIVSEVDGAIGFEDLVEGQSVSETADESTGITKRVVMDWRLNTRSASLKPAIVIKGADGK
VIKLQRGGDARYTLPVDSIIAVEPGGQIKAGDIVARISLESAKTRDITGGLPRVAELFEA
RRPKDHAIIAEISGTVQFGRDYKNKQRLSIVPHEEGADPVEYLIPKGKHIHLQDGDVVEK
GDYIVDGNPAPHDILAIKGVEELAAYLVNEIQEVYRLQGVNINDKHIEVIVRQMLQKVDI
VDAGDTGFLDGEQVDLTELEEANAKALEEGGKPAHGTPVLLGITKASLQTRSFFSAASFQ
ETTRVLTEAAVNGKVDPLVGLKENVIVGRLIPAGTGAAMAKFRGIATGRDDLIITQRAAE
AETRPTTPRLPPAAAE
NT seq
4191 nt
NT seq
+upstream
nt +downstream
nt
atgaatcagcaagaggtcatgaatctcttcaatccggtcgtccagccgcaggcgttcgat
cagattcagatttcgatcgcgagcccggagaaaatcctctcctggtcgttcggcgagatc
aagaagccggagacgatcaactaccggaccttcaagccggagcgcgatggcctgttctgc
gcccgcatcttcggtccgatcaaggattacgagtgcttgtgcggcaagtacaagcgcatg
aaatacaagggcgtcatctgcgagaaatgcggcgtcgaggtcacgctggcgcgcgtgcgc
cgcgaccgcatgggccatatctcgctcgccgctccggtcgcgcacatctggttcctgaag
tcgctgccctcgcgcatcggccttctgctcgacatgacgctgaaggacctcgagcgcatc
ctctatttcgagtcctatatcgtcatcgatccgggcctcacgcccttgaaggagcgtcag
ctcctgaccgaggacgaatatctgcgcgcccaggacgaatatgggcaggaccacttcacc
gccatgatcggcgccgaggcgatccgcaagattctcgaatcgatggatctcgagggcatc
gccgcgcgcctgcgcacggagatcgccgaggccaccaccgagctcaagcccaagaagctc
gccaagcgcctgaagatcatcgaggccttcatccagtccggcaataagccggagtggatg
atcttgaaggaagtcccggtcatcccgccggacctgcgtccgctggttccgctcgacggc
ggccgtttcgcgacctccgatctcaatgatctctatcgccgcgtcatcaatcgcaacaat
cgcctgaagcggctgatcgagctgcgcgcgccggatatcatcatccgcaacgagaagcgc
atgttgcaggaggccgtcgacgctctgttcgacaatggccgccgcggccgcgtcatcacc
ggcgccaataagcgtccgctgaagtcgctcgccgacatgctgaagggcaagcagggccgc
ttccgtcagaatctgctcggcaagcgcgtcgactattccggccgctcggtcatcgtcgtc
ggcccggagctcaagctccatcaatgcggcctgccgaagaagatggcgctcgagctgttc
aagcccttcatctattcgcgcctcgacgcgaagggccattcggccacggtgaagcaggcc
aagaagctggtcgagaaagagaagccggaggtgtgggacatcctcgacgaggtgatccgc
gagcatccggtgctgctcaatcgcgcgccgaccctccatcgcctcggcattcaggccttc
gagccggtgctgatcgagggcaaggcgatccagctgcatccgctcgtctgcgcggcgttc
aacgccgacttcgacggcgatcagatggccgtgcacgtcccgctgtcgctggaagcgcag
ctcgaggcgcgcgtgctgatgatgtcgacgaacaacatcctgcatccggccaatggtcag
ccgatcatcgtgccgagccaagacattgttctcggcctctattatctgtcgctggagcga
gacggcgagccgggtcaaggcatgatgttcgccgatcagggcgagatcgagcatgcgctc
gccgccaagtcgatcacgcttcagaccaagatcaagggccgcgcctggacctataatgag
aagggcgagcgcgtgtcgaaaatcttcgacacgacgcccggccggctgatcctcggccag
ctgctgccgcgcaaccccaagattcccttcgacgcagccaacagactgatgacgaagaag
gaaatctccaacatgatcgacaccgtctaccgcaattgcggtcagaaggagacggtcatc
ttctgcgatcgcatcatggccctcggcttccgcgaggcgttcaaggcgggcatctccttc
ggcaaggatgacatggtcatcccggagacgaaggagcgcatcatcaccgagacgcgcagc
gcgaccaaggagtacgagcagcagtacaacgacggcctcatcacccagggcgagaaatac
aataaggtcgtcgacgcctggatgaagtgctcggagaagctcgccgaggagatgatgatc
cgcatctccaccgtccgcaaggacgagcacggccgcgatctgccgatcaactccatctat
atgatgtcccactcgggcgcccgcggctcgcccgcgcagatgaagcagctcgcggcgatg
cgcggcctcatgaccaagccctcgggcgagatcatcgagaccccgatcatctcgaacttc
aaagaaggcctcaccgttctcgaatacttcaactccacccacggctcgcgcaagggcctg
tcggacacggcgttgaagaccgcgaactcgggctatctcacgcgtcgtctcgtcgacgtg
gcgcaggattcgatcatcaccacggtcgattgcggcaccgagaagggcattcgcatgcgg
gcgatcatcgacgccggtcaggtcgtcgcctcgcttacctcgcgcattctcggccgcacc
gcggcggaggatctgcgcgatcagcagggcaagatcatcgtccccaacggcgagatgatt
caggagtggcatatcgagccgatcaacgccgccggcattcaggaggtgaagatccgctcg
gtgctgacctgcgagtcgaaaaatggcgtctgcggcaaatgctacgggcgcgatctcgcc
cgcggcacgcccgtcaacatgggcgaggcggtcggcgtcatcgcggcgcagtcgatcggc
gagccgggcacgcagctcaccatgcgcaccttccacatcggcggcgctgcgcagctggcg
gaccagtccttcatcgagtccaacttcgaaggcacggtgcatatccgcaaccgccatgtc
gcgcgcaactcggatggcgatctcatcgtcatggcgcgcaacgtcgcggcggtgatcgtc
gggccggacggcgtcgagcgcgccgtcaaccgcatccaatatggcgcgcggctgaaagtg
gacgaaggcgacaagatcaagcgcggcgaccgcatcgcggaatgggacccctatacgcgt
cccatcgtcagcgaggtggacggcgccatcggcttcgaggatctggtcgaaggccagtcg
gtgtcggagacggccgacgaatcgacgggcatcaccaagcgcgtcgtcatggattggcgt
ctcaacacgcgatcggcgagcctcaagcccgcgatcgtcatcaagggcgccgacggcaag
gtgatcaagctgcagcgcggcggcgacgcccgctacactctgccggtcgactcgatcatc
gcggtcgagccgggcgggcagatcaaggccggcgacatcgtcgcgcgtatctcgctcgaa
agcgcgaagacccgcgacatcaccggcggtctgccgcgcgtcgccgagctgttcgaggcg
cgccgtcccaaggatcacgcgatcatcgcggagatctccggcacggtgcaattcggccgc
gactataagaacaagcagcgcctctccatcgttccgcatgaggaaggcgcggatccggtc
gaatatctgatccccaagggcaagcacatccatctccaggacggcgacgtcgtggagaag
ggcgactatatcgtcgacggcaatccggcgccgcacgacattctggcgatcaagggcgtg
gaggagctggcggcttacctcgtcaatgagattcaggaggtctaccgactgcagggcgtc
aacatcaacgacaagcacatcgaggtgatcgtgcgtcagatgttgcagaaggtcgatatc
gtcgatgcgggcgacaccggcttcctcgatggcgagcaggtcgatctcaccgagctcgag
gaggccaacgccaaggcgctcgaggagggcggcaagccggctcacggcacgccggttctg
ctcggcatcaccaaggcctcgctgcagacgcgctccttcttctcggcggcctccttccag
gagacgacgcgcgtgctcaccgaggcggcggtcaatggcaaggtcgatccgctggtcggt
ctcaaggagaatgtcatcgtcggccggctgatcccggcgggcacgggcgcggccatggcg
aaattccgtggcatcgcaacgggtcgcgacgatctcatcatcacgcagcgcgccgccgaa
gcggagacgcgcccgacgactccgcgcctgccgcccgccgcggcggagtga
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integrated database retrieval system
