Methylosinus sp. C49: MSC49_08680
Help
Entry
MSC49_08680 CDS
T09855
Name
(GenBank) hypothetical protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mecq
Methylosinus sp. C49
Pathway
mecq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mecq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSC49_08680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mecq03019
]
MSC49_08680
03400 DNA repair and recombination proteins [BR:
mecq03400
]
MSC49_08680
Enzymes [BR:
mecq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MSC49_08680
Messenger RNA biogenesis [BR:
mecq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MSC49_08680
DNA repair and recombination proteins [BR:
mecq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
MSC49_08680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
HRDC
ResIII
Motif
Other DBs
NCBI-ProteinID:
BBU60933
UniProt:
A0A679F121
LinkDB
All DBs
Position
complement(934467..936023)
Genome browser
AA seq
518 aa
AA seq
DB search
MDEARRVLRARFGHEDFLPGQAAVVAALLGGRDALAVMPTGAGKSLLYQLPAALGVAPVV
VVSPLISLMRDQLRGLTRSGVAAVALHSGQSEEEHGAALAAIADRRAKLVYLAPERLAGD
GTIALLRAAGVALLAVDEAHCVSHWGHEFRPDYAQLGEIAARLGAPVLAVTATAGPRTRA
EIIASLFTRAPEVFVSSFARPNLRLSFRPRGDALGQLTRFLRRREGESGVVYVNSRRKAD
AMAATLRGLGFDALAYHAGLDAATRAAHQDAFFERAGMTMVATIAFGMGVDKKDLRFIFH
ADTPNSIEAYYQEIGRAGRDGRMADALALFDPRELSGRFGFAPPADDPVALGETERRRAM
ARLCLTPACRFQTLLAAFGEESGRCGRCDNCRGGLLALPRRAGLVAQGWRVAVLARFSGA
GAERLDEPEEAPIPAVTPSLSIAPTEERLSVAEERLYRELNRLRLDIAKRRRLAPRAVAS
DMMLRRLAITRPSMIDDFPPGEIVDAPAFLREIAAYDE
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atggacgaggcgcggcgcgtcctgcgcgcgcgcttcggccatgaggattttctgccggga
caggcggccgtggtcgcggctctgctcgggggccgcgacgcgctcgcggtgatgccgacg
ggcgccggcaaatccctgctctaccaattgccggccgctctgggcgtggcgccggtcgtg
gtggtctcgccgctcatctcgctgatgcgcgatcaattgcgcggcctcacgcgctcgggc
gtcgccgccgtcgcgctccattcgggccagagcgaggaggagcatggcgcggcgctcgcc
gccatagcggaccggcgcgcgaagctcgtctatctcgcgccggaacgcctcgccggagac
gggaccatcgcgctcttgcgcgccgccggcgtggcgctgctcgccgtggacgaggcgcat
tgcgtctcccattggggtcacgagtttcgcccggattacgcccagctcggggagatcgcc
gcgcggctcggcgcgccggtgctggcggtgacggcgaccgccggcccgcgcacgcgcgcc
gaaatcatcgccagcctgttcacgcgcgcgccggaagttttcgtctcctccttcgcgcgg
cccaatctgcgcctttctttccgtccccgcggcgatgcgctgggacagctgacgcgcttc
ttgcgccggcgggagggagagagcggggtcgtttatgtgaattcgcgccgcaaggccgac
gctatggcggccacgctgcgcgggctcggcttcgacgcgctcgcctatcacgccggcctc
gatgcagcgacgcgcgcggcgcatcaggacgctttcttcgaacgcgccggcatgacgatg
gtcgcgaccatcgccttcggcatgggcgtcgacaaaaaggacctgcgcttcattttccac
gccgatacgcccaattcgatcgaggcctattatcaggagatcggtcgcgccggccgcgac
ggacggatggcagatgcgctcgccctcttcgatccgcgcgagctttccggccgcttcggc
ttcgcgccgccggcggacgatcccgtcgcgctcggcgagacggagcggcgacgcgccatg
gcgcgcctctgcctcacccccgcctgccgcttccagacgctgctcgccgctttcggcgag
gagagcggccgctgcggacgctgcgacaattgccgcggcggcctgctggcgctgccgcgc
cgcgcgggcctcgtcgcgcaaggctggcgcgtggccgttctcgcgcgcttctccggcgcc
ggcgccgaaaggctcgacgagccggaggaggcgcctatccccgctgtaacgccgagcctc
tccatcgcgccgaccgaggagcggctcagcgtggccgaggagcggctctatcgcgagctg
aaccggctgcgtctcgacatcgccaagcgccgccgtctcgctccgcgtgcggtggcgagc
gacatgatgctgcgtcggctcgcgatcacgcggccgagcatgatcgacgattttccgccc
ggcgagatcgtcgacgcgccggcctttctgcgcgaaatcgcagcgtatgacgaatga
DBGET
integrated database retrieval system
