Methylosinus sp. C49: MSC49_12860
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Entry
MSC49_12860 CDS
T09855
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
mecq
Methylosinus sp. C49
Brite
KEGG Orthology (KO) [BR:
mecq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mecq03000
]
MSC49_12860
Transcription factors [BR:
mecq03000
]
Prokaryotic type
Helix-turn-helix
Other families
MSC49_12860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
AAA_lid_14
HTH_8
AAA_5
AAA_2
AAA
Mg_chelatase
MCM
HTH_50
AAA_22
HTH_30
HTH_29
UBA_HOIP
AAA_16
Motif
Other DBs
NCBI-ProteinID:
BBU61351
LinkDB
All DBs
Position
complement(1373508..1375571)
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AA seq
687 aa
AA seq
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MLGHAAAAVMTMRSAEETGFYGVDRPGVAWDWMKQTGQAPAGADWVRPQVSEAWARCVDD
HALPPGAEFAPRQRRDDRTATELDAWRNSAGGVAGRLSALVYELRALLDETNVALLLADP
AGALVQLLDSGSRITAGAAQMARIGADWSEASLGNNGVGTASLLRTPIAFDGKEHFNGAL
HRFATAGCPITAPDGSLCAILGMVSDRRDAAKLALGFLEIARLLLEASLFDRIASDGYLL
RLRATRDAEPRLADEGRIFIGADGLVRGVDRAGVETLRSDHSALIGQKAATALGVDLPAL
VAAHESARLIPLADPRNQFSVFAEAHRCPKRESYSTSPRRAPDSADAAQRAPEARADWSD
NVLEAALRKASGLQERNIPILITGESGVGKDHLVRRLHAGGPRKERPLVAINCAAIPREL
IESELFGYEGGSFTGARAKGKAGKFVEADKGILFLDEIGDMAADLQATLLRVLDSSEVVP
IGSSKPIRVDVRVVAATNRSLQEMVQKGTFRRDLYYRLNGVQLWLPPLRERPDRLGLLAQ
LFRLEREALAAPEELRFSDEVWRIFFKHPWPGNIREARNVLRSSIAVAKGPLIEIDDLPI
DFIQELDFDNRNIGGAAPPTAIMDEAVESETGFDLSDWEARAVRHALASAKGNIAKAARS
LGITRATLYHKMARYGLRSDRRIVCKR
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgctcggccatgcggccgccgctgtcatgacgatgcgcagcgccgaggagaccggcttt
tatggagtcgaccgtcccggcgtcgcctgggattggatgaagcaaaccgggcaggcgccc
gccggcgccgattgggtgcgcccgcaggtctccgaggcctgggcgcgctgcgtggacgac
cacgctctgcccccgggcgcggaattcgccccgcgccagcgccgcgacgatcgcaccgcg
accgagctcgacgcttggcgcaattcggccggcggcgtcgccggtcggctttcggcgctc
gtctatgagctgcgcgcgctgctcgacgagaccaatgtcgcgctgctgctcgccgatccc
gccggcgcgctcgttcagctgctcgactccggctcgcgcataacggccggcgccgcgcaa
atggcgcgcatcggcgccgattggagcgaggccagcctcggcaataatggcgtcggcacg
gcgagcctgttgcgcacgccgatcgccttcgacggcaaggagcatttcaacggcgcgctg
catcgcttcgccaccgccggctgccccatcacggcgcccgatggaagcctctgcgcgatc
ctcggcatggtctccgaccgtcgcgacgccgccaagctcgccctcggctttctggagatc
gcccgtcttctgctggaggcgagcctcttcgaccgcatcgcctccgacggctatctgctg
cgcctgcgcgcgactcgcgacgccgagccgcgcttggccgacgagggccgcatcttcatc
ggagccgacggactcgttcgcggcgtcgaccgcgccggcgtcgagacgcttcgctccgac
cattccgcgctcatcggccaaaaggcggcgactgcgctcggcgtcgatctgcccgcgctg
gtcgcagcgcatgagagcgcgcgcctcattccgctcgcggatccacgcaaccaattttcc
gtcttcgccgaagcgcatcgctgtcccaaacgtgagagctattcgacatcgccgcgccgc
gcgcccgacagcgccgacgccgcgcagcgcgcgccagaggctcgagccgattggagcgac
aatgtgctggaggcggcgctgcgcaaagcctccggcttgcaggagcgcaatattccgatt
ctcatcaccggcgagtccggcgtcggcaaggatcatctcgtgcgccgcctgcacgccggc
gggccgcgcaaggagcgtccgctcgtcgccataaattgcgccgccattccgcgcgagctg
atcgagagcgaattgttcggctatgagggcggcagcttcaccggcgcgcgcgccaagggc
aaggccggcaaattcgtcgaagcggacaagggcatattgttcctcgacgagatcggcgac
atggccgccgatctgcaagcgacgctgctgcgcgtgctcgattcgagcgaggtggtgccg
atcggctccagcaagccgatccgcgtcgatgtgcgcgtcgtcgccgccaccaatcgcagc
ctgcaggaaatggtgcagaaggggacgtttcgccgcgatctctattatcggctcaatggc
gtgcagctgtggctgccgccgctgcgcgagcggcccgatcggctcggtctgctggcgcag
ctgtttcgtctcgagcgcgaggcgctggccgcccccgaggagctgcgtttctccgacgag
gtgtggcgcattttcttcaagcatccatggcctggaaacatacgcgaggcgcgcaatgtg
ctgcgctccagcatcgccgtcgccaaggggccgctcatagagatcgacgatctcccgatc
gacttcattcaagagctcgacttcgacaatcgcaacatcggcggcgcggcgccgcccacc
gcgatcatggacgaagccgtcgagagcgagacgggcttcgacctctctgattgggaggcg
cgcgccgtgcggcacgcgctcgcttccgcaaagggcaatatcgccaaagcggcgcgcagc
ctcggcatcaccagagccacgctctaccacaagatggcgcgctacggcctgcgaagcgat
cggcgaatcgtctgcaagaggtga
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