KEGG   Methylosinus sp. C49: MSC49_24320
Entry
MSC49_24320       CDS       T09855                                 
Symbol
hfq
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
mecq  Methylosinus sp. C49
Pathway
mecq02024  Quorum sensing
mecq03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mecq00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    MSC49_24320 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    MSC49_24320 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mecq03019]
    MSC49_24320 (hfq)
   03036 Chromosome and associated proteins [BR:mecq03036]
    MSC49_24320 (hfq)
Messenger RNA biogenesis [BR:mecq03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     MSC49_24320 (hfq)
Chromosome and associated proteins [BR:mecq03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    MSC49_24320 (hfq)
SSDB
Motif
Pfam: Hfq Hfq_1
Other DBs
NCBI-ProteinID: BBU62497
LinkDB
Position
complement(2592825..2593094)
AA seq 89 aa
MSSERAQNLQDTFLNYVRKNKVPLTIFLVNGVKLQGIVTWFDNFCLLLRRDGHSQLVYKH
AISTIMPGHPIHMFEPGEEGEQSPPERHR
NT seq 270 nt   +upstreamnt  +downstreamnt
atgtcctccgaacgcgcgcaaaatctgcaagatacgtttttgaattacgtgcggaagaac
aaagtcccactcacgatttttctggtcaatggcgtcaaattgcagggcatcgtgacctgg
ttcgacaatttctgcctcttgctgcggcgcgatgggcattcccagctcgtctataagcat
gcgatctcgacgatcatgcccggccatccgatccatatgttcgagccgggcgaggagggc
gagcagagcccgccggagcgccatcgctga

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