Methylosinus sp. C49: MSC49_28090
Help
Entry
MSC49_28090 CDS
T09855
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
mecq
Methylosinus sp. C49
Pathway
mecq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mecq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSC49_28090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mecq03019
]
MSC49_28090
Messenger RNA biogenesis [BR:
mecq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MSC49_28090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B_2
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
BBU62874
LinkDB
All DBs
Position
complement(2977647..2979317)
Genome browser
AA seq
556 aa
AA seq
DB search
MNEEVSEFVFAPLGGLGEIGMNAALYGFGPPKTRKWLMVDCGLAFPGPELPGVDLLMPDV
TFVEKIRRDLVGLVITHAHEDHIGALSFLWPKLGCTVYATRFAASLLEARRLQEAGSPNI
KVVTVATGQRLDIGPFDVEFVAVAHSIPEANALAIRTPVGLAIHTGDWKIDPEPGVGHRI
DAARLTALGDEGVDALICDSTNILREGDSFSESDVAQTLRKLIGDAKERVLVTTFASNVA
RIRAVAEAAQAAGRSVVVAGRAMERVIQVSRECGFLDGLPPFLSLDMFTALPRDKIVVLA
TGSQGEPRAAMARVAEKEHPVIKLVSGDTVIFSSRAIPGNTREVHRVVNKLCDQGVEVIT
DHDHLVHCSGHPRRGEVAQLYDWVRPRISVPAHGEGHHLSVHAAFARGKGVETTIGARNG
DIVRLFPGAPAIVGKAPTGRLLKDGDVLVSEDDGAVRERARLSFSGVVSLALAIDKRGDL
VGDPDVLISGLPKKGRDGADMGEVVDDAIFRTFDNLPRQKRRDFDAAATAVERAVRASVN
AVWGKKPQVHVLIIEA
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaggaagtgagcgaattcgtctttgcgcctttgggcggtctcggcgagatcggc
atgaacgccgctctctatggcttcggcccgcccaagacgcgcaaatggctgatggtggat
tgcggcctcgcctttcccggcccggagctgccgggcgtcgatctgctgatgccggacgtc
actttcgtcgagaaaatccgccgcgatctcgtcggactggtgatcacccacgcccatgag
gaccacataggggcgctctccttcctctggccaaagctcggctgcaccgtctatgcgacg
cgtttcgccgcgagcctgctggaggcgcgtcgtctgcaggaggcaggctcgcccaatata
aaggtcgtcaccgtggcgacgggccagcgtctcgatatcggccccttcgacgtcgaattc
gtcgccgtcgcgcattcgattcccgaggccaatgcgctcgcgattcgcacgccggtcggc
cttgcgatccacacaggcgactggaagatcgaccccgagcccggcgtcgggcatcgcatc
gacgccgcgcggctgacggcgctcggcgacgagggcgtcgacgcgctcatctgcgactcc
accaatattctgcgcgagggcgacagcttctccgagagcgatgtggcgcagacgctgcgc
aagctcatcggcgacgccaaggagcgcgtgctggtgacgaccttcgcctccaatgtcgcg
cgcatccgcgccgtggcggaagcggcgcaggcggccgggcgcagcgtcgtcgtcgccggc
cgcgccatggagcgcgtcattcaggtttcgcgggagtgcggctttctcgatgggctgccg
ccgtttctctcgctcgacatgttcacggccctgccgcgcgacaagatcgtggtgctggcg
accggcagccagggcgagccgcgcgccgcaatggctcgcgtcgccgagaaagagcatccg
gtcatcaagctcgtctccggcgatacggtcatcttctcctcgcgcgccattcccggcaac
acgcgggaggtgcatcgcgtcgtcaacaagctctgcgaccagggcgtcgaggtcatcacc
gatcacgaccatcttgtccattgctccggccatccgcgccgcggcgaggtcgcgcagctc
tatgattgggtgcggccgcgcatatcggtgccggcgcatggcgaggggcatcatctctcc
gtccacgccgccttcgccaggggcaagggagtcgagacgacgatcggcgcccgcaatggc
gacattgtgcgcctgtttccgggcgctccggctattgtcggcaaggctccgacaggccga
ctgctcaaggacggcgacgtgctcgtctcggaagatgacggcgcggtgcgcgagcgcgcg
cgtctgagcttctccggcgtggtgtcgctggcgctcgccatcgacaagcgcggcgatctc
gtcggcgatcccgatgtgctgatctccggcctgccgaagaaggggcgcgacggcgcggat
atgggcgaggtcgtggacgacgccatcttccgcaccttcgacaatctgccgcggcagaag
cgtcgggatttcgacgccgccgcgacggcggtggagcgcgcagtgcgagccagcgtcaat
gcggtgtggggcaagaaaccgcaagtgcatgtattgatcatcgaggcgtga
DBGET
integrated database retrieval system
