Methylocapsa sp. D3K7: QEV83_02100
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Entry
QEV83_02100 CDS
T08996
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
medk
Methylocapsa sp. D3K7
Pathway
medk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
medk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QEV83_02100 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
medk03021
]
QEV83_02100 (rpoC)
03400 DNA repair and recombination proteins [BR:
medk03400
]
QEV83_02100 (rpoC)
Enzymes [BR:
medk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QEV83_02100 (rpoC)
Transcription machinery [BR:
medk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QEV83_02100 (rpoC)
DNA repair and recombination proteins [BR:
medk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QEV83_02100 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
WGJ15124
LinkDB
All DBs
Position
complement(466480..470676)
Genome browser
AA seq
1398 aa
AA seq
DB search
MNQEVMNLFSPAVQPQAFDQIQISIASPEKILSWSFGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGVICEKCGVEVTLSRVRRERMGHISLAAPVAHIWFLKS
LPSRIGLLLDMTLKDIERILYFESYIVLDPGLTPLKDRQLLNEEDYLRAQDEYGQDSFTA
LIGAEAIREILRNMDLKHIAEGLKVEIAESTTDLKPKKLAKRLKIIEAFMHSGNKPEWMI
LTEVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVG
PDLKLHQCGLPKKMALELFKPFIYSRLDAKGLSATVKQAKKLVEKEKPEVWDILDEVIRE
HPIMLNRAPTLHRLGIQAFEPKLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGQPIIVPSQDIVLGLYYVSLMRDGDIGQGMAFSNMGEIEHALH
AKAVTLHTRIKGRAWSFDEKGERVSKIFETTPGRMILGQLLPDHIKIPFDVVNKLMTKKE
ISNMIDIVYRNCGQKETVIFCDRIMALGFREAFKAGISFGKDDMVVPETKPRIIAETSAL
AKEYEQQYNDGLITQGEKYNKVVDVWMKCSDKLAEEMMLRISSVQKDENGRDKPVNSIYM
MSHSGARGSPTQMKQLAAMRGLMAKPSGEIIESPIISNFKEGLTVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDSIITMTDCGSTGGIRMRAIIDAGQVVASLATRILGRTT
AEDLKDPSGAIIVKTGEMIQEWHIDRINAAGIQEVKIRSVLTCEAKNGVCGKCYGRDLAR
GTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQIADQSFIESNFDGVVKVRNRHLS
RNSEGDLMVMARNVAIVVEGPDGTERAVHRVQYGARLKVDEGDKIKRGQRIAEWDPYTRP
ILTEIDGTVAFEDLVEGASMTETIDEATGIAKRLVMDWRLNQRSVTLKPAIVIKGADGKI
GKLLRGGEARYALPVESIINVDPGGKIKAGDIIARISMDSAKTRDITGGLPRVAELFEAR
RPKDHAIIAEASGIVQFGRDYKNKTRISIIPNEEGAEPIEYLIPKGKHIHLQDGDVIEKG
DYIVDGNPAPHDILAIKGVEELAAYLVNEIQEVYRLQGVSINDKHIEVIVRQMLQKVDIV
DPGDTEFLPGEQVDQTELEEANAEALAARRKPASGTPVLLGITKASLQTRSFISAASFQE
TTRVLTEAAVNGKTDTLEGLKENVIVGRLIPAGTGAAMAKLRRVANMRDEMILAQKAESA
AAAAVPLLAKPDDAPVGE
NT seq
4197 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaagaggtcatgaatctcttcagtccggccgtgcaaccgcaggcgttcgatcag
atccagatttcgatcgcgagcccggagaaaattctgtcctggtcattcggcgaaatcaag
aagcccgagacgatcaattaccgcaccttcaagccggaacgcgatggcctgttctgcgcc
cggatttttggtccgatcaaggattacgaatgcttgtgcggcaaatacaagcggatgaaa
tacaaaggtgtcatctgcgaaaaatgcggtgtcgaggtgacattgtcacgtgtgcggcgc
gaacgtatgggtcatatttcactcgcggcgccggttgcgcatatctggttcttgaaatcc
ttgccgtctcgcatcggtttgctcctcgacatgacgttgaaggacatcgagcgtattctt
tattttgaatcctatatcgtgctcgatccgggactgacgccgctcaaggaccgtcaactt
cttaacgaggaagattacctccgcgcgcaggatgaatatggccaggattccttcacagcc
ctgatcggcgctgaagccattcgcgaaatcctgcgcaatatggatctgaaacatatcgcc
gaggggctgaaggtcgagattgctgaatcgacgacggacctcaagccgaaaaaactcgcc
aagcgattgaagatcatcgaggccttcatgcattccggcaataagcctgaatggatgatc
ctcacggaagttccggtgattccgcctgaccttcggcccctggtgcctcttgacggcggc
cgtttcgcgacctcggatctaaacgatctctaccggcgcgtcatcaatcgcaacaaccgt
ctgaaacggctcatcgaattgcgggcgccggacatcatcgtgcgcaacgagaagcggatg
ctgcaggaggccgtcgatgcattgttcgacaatggccgccgcggccgcgtcatcaccggc
gccaacaagcggccgttgaagtcgctcgccgacatgctgaaaggcaaacaaggccggttc
cgccagaatctgcttggcaagcgggtcgattattccggccgttcggtcatcgtggtcggg
ccagatctcaagcttcatcaatgcggtctgccgaaaaagatggcactcgagctattcaag
ccgtttatctattcgcgtcttgacgcaaagggactgtctgcgaccgtcaagcaggcaaaa
aagctggtcgaaaaggaaaagccggaagtttgggatattctcgacgaagtcatccgcgag
catcctatcatgctgaaccgggcgccgacgttgcaccgtctcggcattcaggctttcgaa
ccgaagttgatcgagggtaaggctatccagctgcatcccctcgtctgcgccgcgttcaat
gcggatttcgatggcgatcagatggctgtgcatgtgccgctttcgctcgaggcgcagctt
gaagcgcgcgttttgatgatgtcgacgaacaatattttgcatccggcgaatggccagccg
atcatcgtgccatcgcaggatattgtgcttggcctttattatgtttcgctgatgcgggac
ggcgatatcggccaggggatggcgttctccaatatgggcgagatcgaacatgccttgcat
gccaaggctgtcaccttgcacaccagaatcaaagggcgggcatggagctttgatgagaag
ggtgaacgagtctcaaagattttcgagacgactcctggccggatgattctgggccaactg
ctgccggaccatatcaaaattcccttcgatgtcgtgaacaagctcatgacgaagaaggaa
atctcgaacatgattgatatcgtctatcgcaattgcgggcagaaggagacggtcattttt
tgcgaccggatcatggcgctcgggtttcgcgaggcgttcaaggccggcatttccttcggc
aaggacgacatggtcgttccggaaaccaagccgcgtatcatcgccgagaccagcgcgctc
gcgaaggaatacgagcagcaatataatgatgggctcatcacccagggcgaaaaatacaac
aaagtcgtcgatgtctggatgaaatgttcggacaagctggccgaagagatgatgctgcgc
atctcgtccgtgcagaaggacgagaacggccgcgataagccggtcaattctatctacatg
atgtcgcactctggtgcgcgtggatcgccgacccaaatgaagcagctggcggcgatgcgc
gggttgatggcaaagccttcgggagagattatcgaaagcccgatcatttccaacttcaag
gaaggccttaccgtgctcgagtacttcaactcgacgcatggcgcgcgtaagggtcttgcc
gataccgctttgaaaaccgcgaattctggctatctcacgcgccgtctcgtcgatgtcgcg
caggattcgatcatcacgatgaccgattgcggctccacgggcggcattcgtatgcgcgcc
atcattgacgcgggacaagttgtcgcctcgctcgcaacacggattcttggacgaaccacg
gccgaggatttgaaggacccatccggggcgatcatcgtcaaaacgggcgagatgattcag
gaatggcatatcgaccgcatcaatgcggccggaatccaagaagtgaagatccgttcggtc
ttgacctgcgaagctaagaatggggtctgcggcaaatgctacggccgcgacctggcgcgc
gggacgccggtcaacatgggcgaggccgttggtgtcatcgcagcgcaatcgatcggcgaa
ccgggtacgcagctcactatgcgcacgttccacattgggggcgcggcgcagatcgccgat
cagtctttcatcgaatccaactttgatggcgttgtgaaggttcgcaaccggcatctctcc
cgcaacagcgagggagatctcatggtcatggcgcgcaatgtcgcgatcgtggtcgagggt
ccagatggcacggaacgcgcggttcaccgggttcaatatggcgcgagactcaaggtcgac
gagggcgacaagatcaagcggggccagcggatcgctgaatgggatccctatacaaggcct
attctgaccgagatcgatggaacggtcgcattcgaggatctcgtcgaaggggcctccatg
acggagaccatcgacgaggcaaccggtatcgccaagcgcctcgtcatggactggcgcctc
aaccagcgctcggtgactttgaagcccgcgatcgtaatcaaaggcgcggacggcaagatc
ggcaaactgctccgcggcggcgaggcgcgttatgctctgccagtggagtcgatcattaac
gtcgatccgggagggaagatcaaggctggcgatatcattgcgcgtatctcgatggattcg
gctaagacgcgcgacatcactggcggtctgccgcgtgtcgctgaattgtttgaagcgcgc
cggccgaaggaccacgcgattattgccgaggcgtccggcatcgtgcaattcgggcgcgac
tataagaacaagacacgcatctcgatcattcccaatgaagagggcgcggaaccgatcgaa
tatctcatccccaaaggcaagcacatccatctccaggatggcgatgtcatcgaaaagggc
gattatattgtcgatggaaatcccgcgccgcacgacattcttgcgatcaaaggagtcgaa
gaactcgccgcctatctcgtcaatgagattcaggaagtctatcgtttgcaaggtgtcagc
atcaacgacaagcatatcgaggtgattgtccggcagatgctgcagaaggtcgatatcgtc
gatcctggcgacaccgagtttttgcccggcgaacaggtcgatcaaaccgaactcgaggag
gccaatgccgaggcgctcgcggcgcggagaaagccggcctcgggcactccggtcctgctt
ggaatcactaaggcgtcgctgcagacgcgctcgttcatctcggctgcctccttccaggag
acgacgagggttctgaccgaggcagcggtcaatggcaaaaccgatacgctggaaggctta
aaggaaaacgtcattgtcggccgcctcatcccagctggaacaggggctgcgatggccaag
cttcgccgcgttgcaaacatgcgcgacgaaatgattttggcgcaaaaagccgaaagcgcg
gcggcggcggcagttccgttgctcgcaaagcctgatgacgcgccggttggagaatag
DBGET
integrated database retrieval system
