Methylocapsa sp. D3K7: QEV83_02105
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Entry
QEV83_02105 CDS
T08996
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
medk
Methylocapsa sp. D3K7
Pathway
medk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
medk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QEV83_02105 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
medk03021
]
QEV83_02105 (rpoB)
03400 DNA repair and recombination proteins [BR:
medk03400
]
QEV83_02105 (rpoB)
Enzymes [BR:
medk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QEV83_02105 (rpoB)
Transcription machinery [BR:
medk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QEV83_02105 (rpoB)
DNA repair and recombination proteins [BR:
medk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QEV83_02105 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
WGJ16451
LinkDB
All DBs
Position
complement(470792..474913)
Genome browser
AA seq
1373 aa
AA seq
DB search
MAQTFTGRKRIRKFFGHIREVAEMPNLIEVQKASYDQFLLVDEPEGGRPDEGLQSVFKSV
FPISDFSNTALLEFVKYEFEPPKYDVDECRQRGMTYAAPLKVTLRLIVFDVDPDTGARSV
KDIKEQDVYMGDMPLMTMNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKLLFAA
RIIPYRGSWLDIEFDAKDIVHARIDRRRKIPATSILYALGMDGEEILATFYKTITYQRDK
DGWRLPFEPDRMKGMKAAVDVLDADTGEVVLEAGKKLTVRSARLLSERGVKFLRAQDDDL
HGQYIASDLYNPATGEIFAEAGDEITAKSLVLLIEAGFTELPVLDIDHVNIGPYIRNTLA
ADKNSSREEALFDIYRVMRPGEPPTIDSAEAMFKSLFFDPERYDLSAVGRVKMNMRMDLD
AADTVRTLRKEDIVAVMRALVDLRDGRGEIDDIDHLGNRRVRSVGELMENQYRLGLLRME
RAIKERMSSVDIDTVMPQDLINAKPAAASVREFFGSSQLSQFMDQTNPLSEITHKRRLSA
LGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIETPYR
RLKDSRITDEVVYLSAMEEAKYFVAQANAPVDENQSLTEDLVVCRHSGDVVMVPRERVDF
MDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRADAPLVGTGMESVVAQDS
GAAIAARRTGFVDQVDATRIVVRATEETDAGKPGVDIYRMMKFQRSNQSTCINQKPLVRV
GDFVRKGDIIADGPSTDLGDLALGRNVLVAFMPWNGYNFEDSILLNERIVKDDVFTSIHI
DEFEVLARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVQAGDILVGKITPKGES
PMTPEEKLLRAIFGEKASDVRDTSLRVPPGVQGTIVEVRVFNRHGVDKDERAQAIEREEI
ERLAKDRDDELAILDRNVYTRLMDELVDKKAIAGPKGFKRDTKLTKEIIEDYPRSQWWIF
AVENDRTMAELEAMRKQYDEAKKGLESRFLDKVEKLQRGDELPPGVMKMVKVFVAVKRKI
QPGDKMAGRHGNKGVVSKIVPQEDMPFLADGQPVDIVLNPLGVPSRMNVGQILETHLGWA
CAGLGKQIGETVNAYLRDKNTKPLRDKLIEIYDAKKEIMALEDEEVVELGENLRRGVPIA
TPVFDGAREKDIVAMLEQAGLDSSGQVTLYDGRTGEAFDRKVTVGYIYILKLHHLVDDKI
HARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTK
VYESIVRGDDAFESGIPESFNVLVKEMRSLCLNVELTQMAKPQSQLPPAEAAE
NT seq
4122 nt
NT seq
+upstream
nt +downstream
nt
atggcacagacgttcaccggccgtaagcgtattcgtaaatttttcgggcacatccgcgaa
gtcgcggaaatgcccaacctgatcgaagttcaaaaagcctcctacgatcaatttcttctt
gtcgacgagccggaaggcgggcgtccggacgaaggtttgcaatcggttttcaaatcggtt
ttcccaatttccgatttttcaaataccgccctgcttgaatttgtcaaatatgaattcgag
ccgccgaaatatgacgtcgatgaatgccgccagcgcggcatgacctatgccgcgccgctc
aaagtgactttgcgcctcatcgtcttcgatgtcgatcccgacaccggcgcgagatcggtc
aaggacatcaaggagcaagacgtatatatgggcgacatgcccttgatgacgatgaatgga
acgttcatcgtcaatggcaccgagcgggtgatcgtttcccagatgcaccggtcgccaggc
gtgtttttcgaccacgacaagggcaaaagtcattcctccggcaagcttctgttcgccgcg
cggattattccctatcgcggctcttggctcgacattgaattcgacgccaaggacattgtg
catgcccgtatcgaccggcgccggaaaattcccgccacctcgatcctttacgcgcttggc
atggacggcgaggagattctcgcgacattctataagacgatcacctatcagcgcgacaag
gacggctggcggcttccgttcgagccggatcgcatgaaaggcatgaaggcggccgtcgat
gtgcttgacgccgataccggtgaggtcgtcctcgaagcaggcaagaagctcactgtacgc
agcgcgcgcttgttgtcggagcggggcgtcaaattcttgcgcgcgcaagacgatgacctt
catggccaatatatcgcctccgatctctacaatccggctaccggtgaaatctttgccgag
gcgggggatgagatcaccgccaaatccttggtgcttttgatcgaagctggcttcaccgaa
ttgccggtgcttgacatcgatcatgtcaatatcggtccctacatccgcaacacgcttgcc
gctgacaagaacagctctcgcgaggaggctttgttcgacatctaccgggtcatgcgacca
ggagaaccgccaaccatcgactcggcggaggcgatgttcaagtcgctgtttttcgatccg
gagcgctatgatctctcggcggtcggccgggtcaagatgaacatgcgcatggatctcgac
gcggcggacacggtgcggacgctccgcaaggaagatattgtcgccgtcatgcgggcactc
gtcgatctgcgcgatgggcgtggcgaaatcgacgacatcgatcatctcggtaatcgccgt
gtgcgctcggttggcgaactgatggagaatcagtaccggctcggattgctgcggatggag
cgggcgatcaaggagcggatgtcctcggtcgatatcgataccgtcatgccgcaggacttg
atcaacgccaaaccggcggcggcctcggtgcgcgaatttttcggttcgtcgcaattatcg
caattcatggatcagaccaacccgttgtcggaaatcacccataagcggcggctgtcggcg
cttggacccggcggccttacgcgcgagcgggccggcttcgaggtgcgcgacgtgcatccg
acgcattatgggcgtatctgccccattgaaacgccggaagggccgaacatcggtctcatc
aactcgctcgcgacatttgcccgggtcaacaaatacgggttcattgagacgccttaccgg
cggctcaaggatagccgcatcaccgatgaggtggtttatctttcggcgatggaagaggcc
aaatatttcgtcgcgcaggccaatgctccggttgacgaaaatcagtcgctgaccgaggat
ctcgtcgtctgccggcattccggcgatgtcgtgatggttccgcgcgaacgcgtcgatttc
atggacgtctcgccaaagcagctcgtctcggtcgccgccgccctgattccgttcctcgaa
aacgacgacgccaaccgcgccctcatgggttccaacatgcagcggcaagccgtgccgctc
gtccgggccgacgcaccgcttgtcggcaccgggatggaatccgtcgttgcgcaggactcg
ggcgccgcgatcgcagcgcggcgcacaggattcgtcgatcaagttgacgcgacgcgcatc
gtggtccgcgccaccgaggaaaccgatgccggcaagcccggcgttgatatttaccggatg
atgaagttccaacgctcgaaccagtcgacctgtatcaatcagaagccgttggtgcgtgtt
ggcgatttcgtgcgcaagggagatatcatcgccgacggtccgtcgaccgatctcggcgat
ctggcacttggccgcaacgtccttgtcgctttcatgccgtggaatggatataatttcgaa
gattcgatcctcctcaacgagcgaatcgtcaaggacgatgtgtttacgtcgatccacatt
gacgagttcgaggtgctggcgcgcgacaccaagctcggtccggaggagattacgcgcgat
attccgaacgtctcggaagaagcgttgaagaatctcgacgaggccgggatcgtctatatc
ggcgccgaggttcaggcgggcgacattctggttggcaaaatcacgccgaaaggcgagagc
ccgatgacgccggaagagaagctcttgcgcgcgatttttggcgagaaggcgtcggatgtc
cgcgatacgtctttgcgggtgccgcccggcgtgcaagggacgatcgtcgaagtgcgtgtc
ttcaaccggcatggcgttgacaaggacgagcgcgcccaagccatcgagcgcgaggagatt
gagcgtctggcgaaggaccgcgacgacgaattggcgatcctcgaccgcaacgtttacacg
cgtcttatggacgaattggtcgacaagaaagcgatcgccggacccaaaggtttcaagcgc
gataccaagcttacgaaggagatcattgaggattatccgcgctcgcaatggtggattttc
gcggtcgagaacgaccgaacgatggccgagcttgaggcgatgcgcaagcaatatgacgag
gccaagaaaggtcttgagagccggtttctcgataaggtcgaaaaactgcagcgcggcgat
gaattgccgccaggcgtgatgaagatggtgaaggtcttcgtcgcggtaaagcggaagatc
cagcctggcgataagatggccggacggcatgggaataagggcgtcgtgtccaagatcgtg
ccgcaggaggacatgcccttcctcgccgatggccagccggtggacattgtcttgaatccg
cttggcgtgccgtcccggatgaatgtcgggcagattctcgaaacccatctcggctgggcc
tgcgccggtcttggcaagcaaatcggcgagactgtgaatgcctatctgcgggataagaac
accaaacccttgcgcgataagttgatcgaaatctatgacgccaagaaggaaatcatggcg
cttgaggacgaagaggtggtcgaactcggagagaacctgagacgcggcgtgcccattgcg
acgccggtgtttgacggagcccgcgaaaaggacatcgtcgcgatgctggaacaggcgggc
cttgatagctccggtcaggtgacactgtatgatggacgcaccggtgaagccttcgaccgc
aaggtgaccgtgggctatatttatattctgaaacttcaccacctcgtcgatgacaagatc
catgcgcgttcgatcggcccctatagtctcgtcacccagcagccgcttggcggtaaggca
cagttcggcggccagcgtttcggcgagatggaggtctgggcgctcgaagcgtatggggcg
gcctatacgctgcaggaaatgctgaccgtcaagtcggacgacgtcgccggccgcaccaag
gtttacgaatcgatcgtgcgcggtgacgacgcatttgaatctggcattcccgaaagcttc
aacgtcctcgtcaaggagatgcgttcgctgtgtctcaatgttgaactgactcaaatggcg
aaaccgcagagccaattgccgccggccgaggcggccgaataa
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