Methylocapsa sp. D3K7: QEV83_03765
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Entry
QEV83_03765 CDS
T08996
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
medk
Methylocapsa sp. D3K7
Brite
KEGG Orthology (KO) [BR:
medk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
medk03019
]
QEV83_03765 (hrpB)
Enzymes [BR:
medk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
QEV83_03765 (hrpB)
Messenger RNA biogenesis [BR:
medk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
QEV83_03765 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
CON_HrpB
HA2_N
Flavi_DEAD
ResIII
AAA_30
AAA_19
Motif
Other DBs
NCBI-ProteinID:
WGJ15409
LinkDB
All DBs
Position
827915..830389
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AA seq
824 aa
AA seq
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MKFATPLPIDAVLAELTTALAAHRSAVLVAPPGAGKTTRVPLALMDESWLLGRKILVLEP
RRIAARAAAERMAHTLSEAIGGRIGLRARMVSKSGPNTCIEVVTEGVFTRMILDDPELSG
IGAVLFDEFHERSLDADLGLALALDCQCGLRDDLRILPMSATLNSARVAQLLGNAPIIAS
EGRAFPVETRYLGRADNARIEDQMADAVMRALRTESGSILAFLPGQSEIRQVEERLQERI
SDPTIVLAPLYGAMDMKAQDLALKPAPKGVRKVVLATSIAETSVTIEGVHVVIDSGLARV
PRFEPDVGVTRLETVRVSRAAADQRRGRAGRTEPGVCFRLWDEPQTQSLPAFAEPEIRSA
DLTALLLDCAEWGTTDPLLLSWIDPPSAAATNAAREELMELEALDKRGSITAMGRRLRSL
PLPPRLARMVIFAAEVGQAEKAAEIAAVMVERGLGGNDVDLAYRLEDFRRDRSRRASEMR
KLAVGWAQMANAGRSAQEPREDMSVARTLAFAFPERIGKARGAPGHFLLANGRGASLDST
HPLARSPFLVSAELSGSAGSTRILLATSANEADILAAASHRIREKDEIEFDQSAGALRSR
RVRRLDAILLANEPKAVIASEEAARLLADGIAQHGLSRLPWSKAQIQLRDRVGFLRAAGE
DEWPDLTIEALAKTAAEWLAPFLAGKTKLSEIGADDLGAALDALLPWNLKRRLDEEAPTH
FEAPTGNHHAIDYETGPAPTLHIRVQELFGLTQHPSIAKGKLPLTLYLLSPAHRPIQITR
DLPGFWKGSWTAVKADMKGRYPRHPWPDDPTSAVPTSRAKPRGT
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atgaagtttgccactccgcttccgattgacgccgtcctggctgaattgacaacggctttg
gccgcgcacagatctgccgtcctagtcgccccacccggcgctggtaaaacgacacgcgtc
cctctcgccttgatggatgaaagctggctcctgggtcgaaagatcctggttctggaaccg
cggcgcattgccgcgcgggctgccgccgagcgcatggcacacaccttgtcggaggctatc
ggagggcggatcggattgcgtgcgcggatggtctcgaaatcagggccgaatacatgtatc
gaggtcgtcacggagggagtctttacccgcatgatcctcgatgatcctgagctttccggg
atcggcgcggtgctgttcgacgagttccacgagcgctcgctcgatgccgatctgggactt
gccctcgcgctcgactgccagtgcggcttacgcgatgacctgcgcatcctgccaatgtcg
gcgacgctaaatagcgctcgggtcgcccaacttctcggcaatgctcccatcatcgccagc
gaaggtcgcgcgttcccggtcgagacgcgttatctcggccgtgctgacaacgcgcgcatc
gaggaccaaatggcagacgcggtgatgcgggccttgcggacggaatccggttcaatcctg
gcgttcctgccgggccaaagcgagatccggcaggttgaggagcggttgcaggagcgcatc
agcgatccgacaatcgtgcttgccccgctttacggggcgatggacatgaaagcgcaggac
ctcgcactcaagccagcacccaagggagtgcgcaaggtggtgctcgcgacctcgattgcc
gagacgtcggttaccatcgagggcgtgcatgtcgtcatcgacagtggtcttgcgcgagtt
ccacgtttcgagccggacgtcggcgtgacacggctcgagactgtgcgcgtgtctcgtgcc
gccgccgatcagcggaggggccgcgctggccgtaccgagccaggtgtctgctttcgcctg
tgggacgagccgcaaacgcagagccttccagctttcgccgagcccgagattcgctctgcc
gatcttacagccctgttgctcgactgcgcggaatggggaacaaccgatccgctcttgctg
tcttggatcgatccaccgtcggccgccgccacaaacgccgcgcgcgaggaactgatggag
ttggaagcgctagacaaaagaggcagcatcacggccatggggaggcggctcaggtcgctg
cctctgcctccccggcttgctcgtatggtgatttttgcagccgaggtgggccaggcagag
aaggctgccgagatcgctgcggttatggtggaacgcgggttaggcggcaatgatgtcgat
ctcgcatatcggctagaagatttccgccgtgaccgctcgcgtcgcgcgagtgagatgcga
aagctagctgtcggctgggcccagatggcaaatgcggggcgctcggcacaagagcctcgt
gaggacatgtcggtcgcgcgcacgctggcgttcgcctttccggagcgcatcggcaaagca
cgtggcgcaccgggccactttctcctcgccaatggccgcggcgccagccttgattcgact
catcctttggcgcgatcacctttcctcgtctctgccgagctgtcgggatcagcggggtca
acgcgcatcctgctcgcaacctcagctaatgaagcggacattctcgctgccgccagtcat
cgcatccgcgagaaggacgagatcgagttcgatcaaagcgcaggcgcgctgaggtcgcgc
cgtgtccgccgtcttgacgccatcctgctcgcaaacgagcccaaggcggtaatcgcgagc
gaggaggctgcgcgtctactggctgacggcattgcacagcacggactgagccgtctgccg
tggagcaaggcgcaaattcagctccgtgaccgggtcggcttcttgcgcgcggccggagag
gacgaatggccggacctgaccattgaagcgcttgccaagacggccgcggaatggcttgcc
cctttcctagctggtaagacgaagctctccgagatcggcgctgatgacctcggcgcggcc
ctcgatgcgctgctgccatggaacttaaagcggcgcttggacgaagaggctccgacgcat
ttcgaggcgcccacgggcaatcatcacgccatcgattacgagacgggacccgcgcccacc
ctgcacatccgcgtgcaggagttgtttgggctgacgcaacatccttcgatcgccaagggc
aagctgcccctcacactgtatttgctctcgccggcgcaccggccgattcagatcacgcgc
gatctcccgggtttctggaagggatcgtggacggcggttaaggccgacatgaaagggcgc
tatccgcggcatccctggcccgacgatcccacctcggcagttccgacctctcgggccaag
ccacgcggaacgtga
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