Methylocapsa sp. D3K7: QEV83_04785
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Entry
QEV83_04785 CDS
T08996
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
medk
Methylocapsa sp. D3K7
Pathway
medk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
medk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QEV83_04785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
medk03019
]
QEV83_04785
03009 Ribosome biogenesis [BR:
medk03009
]
QEV83_04785
Enzymes [BR:
medk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
QEV83_04785
Messenger RNA biogenesis [BR:
medk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QEV83_04785
Ribosome biogenesis [BR:
medk03009
]
Prokaryotic type
rRNA processing factors
QEV83_04785
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
WGJ15588
LinkDB
All DBs
Position
complement(1045568..1048651)
Genome browser
AA seq
1027 aa
AA seq
DB search
MANKMLIDASHPEETRVVVLRGNRVEEFDFESANKKQLRGNIYLAKVMRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYYQIPVADRQALIEDDARAQRDEEDDGARSQRRSRRFRRGDRN
GHRAEKRSGIDQTMSEPYAGELMSEPYAGELAFEARDTLTPEADEQSPSEPSAAEQDVAP
HEGAPEDSGRVDADDGDAGALEAPAPGTLVAQADIEEFVQAGRAPDAEFAADTESHSSMS
WEDSGPVSEPEQPILETDFAGEHVQDAETDRISRPPAEPGNNVGDEEEDEAEAGEIEQLG
GDAMEEMPVRSYRHRKQYKIQEVIKRRQVLLVQVVKEERGNKGAALTTYLSLAGRYSVLM
PNTARGGGISRKITDSGDRQRLKSIAEELDVPEGMGVIVRTAGAARTKPEVKRDFEYLLR
MWETVRETTLQSTAPMLVYEEGSLIKRAIRDLYNKDIDEVVVAGEEGYREAKEFMRLLMP
SHAKMVQPYRDPQPMFAKSGAETQLDAMFSNQVTLKSGGYIVINQTEALVAIDVNSGRST
REHNIEDTALRTNLEASDEIARQLRLRDLAGLIVIDFIDMEENRNNRTVERRLKDALKND
RARIQVGRMSHFGLLEMSRQRMRTGVIEGSTVACPHCAGAGMVRSTSSIALHVLRAMEDA
LIKNSSYDIVVKTRTAVALYILNQKRPHLRDLENRFGVSVMITSDDSLSGTNYYALERGE
LAVAANKIVPSQPVAAPAAELADRFFDEAAVDDDGSPDELAAIEAAPAEGHTHRDSEHEA
EGRQRRRRRRRRGRGGDREGSGIAANAPQPPDDALEVMAKIGGLRPNATLDDDADTEQAI
VSAIDETPLDQQRSGRSSGREGRRPRRVTGDADGDTNPSETQPESLELSGSEAEALDLPS
GTEANRGRSSSGRVRRSRRPPRGSRVSQIDDVAASAQEAEPDLLVDDVREQEASPGASLL
DIAAEVNSAFGNVQTDAREASRPDAYGSSEQPVTPPRLPEDPQPEALDPARPKRSGWWQR
ARASGHR
NT seq
3084 nt
NT seq
+upstream
nt +downstream
nt
atggccaacaaaatgcttatcgatgcgtctcaccccgaagaaaccagggtggtcgtcctt
cgcggtaatcgggttgaggaatttgatttcgagtccgccaataaaaaacaacttcgcggc
aatatttatctcgcgaaagtcatgcgagtcgaaccgtcactccaggcggcgtttgtcgat
tatggcggcaaccggcacggcttcctggcgttctcggaaatccatcccgattattaccaa
attcccgtcgccgaccgccaagccctgatcgaggacgatgcgcgggcgcagcgcgatgag
gaagacgacggcgcgcgttcgcagcgccgcagccgccgtttccggcggggcgaccgcaat
ggccatcgggctgagaagcggagcggcatcgatcaaacgatgtcagagccctacgccggt
gagttgatgtcagagccctacgccggtgagttggcgttcgaagccagggatactctgacc
cccgaggccgacgaacaatcgccaagcgaaccgtctgcggcggagcaggacgttgctccc
catgaaggcgcgccggaagactcgggtcgcgtcgatgccgatgacggcgacgctggggca
ttggaggctccggcgcctgggaccttggtggcacaagcggacatcgaggagttcgtgcag
gcaggccgcgccccggacgctgaattcgcggcggacactgaatcccattctagcatgtcg
tgggaggactccggtccggtctcggaaccagaacagccaattctcgaaacagattttgcg
ggcgaacacgtgcaagacgccgaaacggaccggatctcccggcccccggctgagcctggc
aacaatgttggcgatgaagaagaggacgaagctgaagctggcgagattgaacagctcggc
ggtgacgcgatggaggagatgccggttcgttcctaccgccatcgcaagcaatataagatt
caggaggtcatcaagcgccgccaagtgctgcttgtacaggtcgttaaggaagagcgcggc
aacaagggcgcggcgctgacgacctatttgtcgctggctggcaggtattccgttttgatg
ccaaacaccgcgcgcggcggcgggatctcccgaaagattaccgattccggtgaccgccaa
agattgaagtccatcgcggaggaactcgacgttcccgaaggcatgggcgttatcgtccgc
accgctggcgccgcgcgaaccaaacctgaagtcaagcgcgacttcgaatatttgctgcgc
atgtgggaaacggtgcgcgaaaccacgttgcaatcgactgcgccgatgctggtctatgag
gaaggttcgctgatcaagcgggcaatccgcgatctttacaacaaggatatcgacgaggtt
gtcgtcgcgggggaagagggctatcgcgaggccaaggaattcatgcgcttgctcatgccg
agccatgcaaaaatggtccagccctatcgcgatccgcagccgatgttcgccaaatccggc
gccgaaacccagctcgacgcgatgttctcgaaccaggtcacgttgaagtccggcggttat
atcgtcatcaatcaaaccgaggctttggttgcgattgacgtgaattccggccgctccacg
cgtgaacacaatatcgaagacacggcgctgcggaccaacctcgaggcctccgatgagatc
gctcgccaattgcggctgcgtgaccttgctggtctcattgtcatcgatttcatcgatatg
gaggaaaatcgcaacaaccgcactgtcgagcggcgcctaaaggacgcgctgaagaacgac
cgggcccgcatccaagtcggccggatgtcgcattttggccttttggaaatgtcgcgccag
cgcatgcgcaccggggtgatcgaggggtcgaccgttgcttgtccgcattgcgccggcgcc
ggaatggtgcgctcgacgtcatccatcgcgctgcacgttctgagggctatggaagatgct
ctgatcaagaattcgagttatgacatcgtcgtcaaaacgaggacggccgtcgcgctttat
attctcaatcagaaacgcccccatctccgcgacttggaaaaccggtttggcgtatcggtg
atgatcacctccgatgatagtttgtctggcacaaattattatgccttggagcggggcgaa
ctcgcggtggcggcaaacaagatagtgccgtcccaaccggtcgctgcgcccgccgccgaa
ttggccgatagattttttgatgaagccgccgtagacgatgacggttcgcctgatgagttg
gccgcgatcgaggcggcgcctgccgagggtcatacccatcgcgacagcgaacacgaggcc
gagggacggcaaaggcgccggcgccggaggcggcgtgggcgtggcggtgatcgcgagggc
tccggaattgccgcgaacgctccgcaacctcccgacgatgcgctggaagtgatggccaag
attggcggattgcgcccgaacgccacgctcgacgacgatgcggacaccgaacaagccatt
gtgtccgccatcgacgaaacaccgctcgaccagcaacgttcgggccgaagttcgggacgc
gaaggccgccgcccgcgcagagtgacgggcgatgccgatggggatacaaacccctcagaa
actcaacccgagtcgctggagttgagtggatcagaagccgaggcgcttgatctgccctcc
ggcacggaggcgaacagagggcgttcctcgtctggtagggtgcggcgaagccgccggccg
ccgcgcggatcccgtgtctctcaaattgatgatgttgcggcgtcggctcaagaggcagaa
ccggatctccttgttgatgacgtgcgagagcaggaagcgtcgccaggagcttcactgctg
gatattgcggccgaggtaaattctgcgttcggcaatgttcaaacggatgcccgtgaggct
tcccgcccggacgcttatggctcgtcggaacaacccgtaacgccaccgcgcttgcctgaa
gacccacaacccgaggcacttgatccggcccgccctaaacgctcaggctggtggcaacgg
gcgcgcgcaagcggacatcgttaa
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