Methylocapsa sp. D3K7: QEV83_08585
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Entry
QEV83_08585 CDS
T08996
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
medk
Methylocapsa sp. D3K7
Pathway
medk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
medk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QEV83_08585 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
medk03019
]
QEV83_08585 (rnr)
03016 Transfer RNA biogenesis [BR:
medk03016
]
QEV83_08585 (rnr)
Enzymes [BR:
medk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
QEV83_08585 (rnr)
Messenger RNA biogenesis [BR:
medk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QEV83_08585 (rnr)
Transfer RNA biogenesis [BR:
medk03016
]
Prokaryotic type
tRNA degradation factors
QEV83_08585 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
WGJ16511
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All DBs
Position
1885274..1887568
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AA seq
764 aa
AA seq
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MPSRADILAFIAREREALGGKAHGKIGKREIARAFNIRGADKIALKRLLKDLESEGAIER
RRKTLHKQGLLPAIVLADVTARDRDGDLLAAPAEWDIAQGPAPKILLTIRARTNSRSGAP
APAPGDRALIRVEPLPGAEPGEPTYAGRVVKLLPRSKAQLLGIFRASMGGGGRIVPIDKK
NVNRGELSVGPGDEGAAGDGDLVSVEILRTGRLGLPAAKVRERLGALDNEKAISLIALHS
HRIPHVFRPDALVEAERARPDSMAHREDWRAIQLLTIDPADAKDHDDAVHAERDPDPANP
GGYILRVAIADVAAYVTPGGALDSEARERGNSVYFPDRVVPMLPERISNDLCSLRPNEDR
PALAAKLIIAADGHKLSHGFHRVMMRSAAKLSYTQAQTLIDAAPGAATESLMSVLVPLYE
AYAALKTARDKRGPLDLDLPERKILLDDKGAVKAVVTPPRLDSHRLIEEFMILANVAAAE
TLEAKQQAFIYRVHDEPSIEKINNLAEFLASIGLKFNKGQVLRAAQFNGILGRVKGTDNE
HLVNEVVLRTQAQAEYAVDNYGHFGLNLRRYAHFTSPIRRYADLIVHRALILALNLGPDG
LPVSANKELAEIAAAISAAERRAMAAERETSDRLIAAHLADQIGATFEGRISGASSAGLF
VKLDGTGADGFIPAAMLGDDYFRHDAARHALIGSRTGQMHRLGDVVTVRLVEAAPLAGAL
RFELLKESTPRHTRSKAAKGQRSARRGKLGVSDTLPSRAKASKR
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
ttgccctcgcgggcggacatcttggccttcattgcccgcgagcgcgaggctttgggcggc
aaggcacacggaaaaatcggcaaacgcgaaatcgcccgcgccttcaacatcaggggcgcg
gacaagattgccttgaagcgcctcttgaaagatctcgagtccgaaggtgccatcgagcgc
cggcgcaagactctgcacaaacaaggtctccttccggccatcgttctcgccgatgtgacc
gcccgcgaccgcgacggagatcttctcgccgcccccgccgaatgggacatcgcgcagggg
ccggcgccaaaaatcctgctcacgatccgagccagaaccaactcgcgctcaggagcgccc
gccccggcgcctggagaccgcgccctgatccgggtggagccgttgcccggcgcggagccc
ggtgagcctacctatgccgggcgtgtcgtaaaacttttgccgcgttccaaagcccagctc
ctggggatttttcgcgccagcatgggcggcggcggccgcatcgtgcccatcgataagaaa
aacgtcaatcgcggcgaattgagcgttggccccggtgacgaaggcgcagcaggtgatggc
gatctcgtctccgtcgagattttgcgcaccggccgcctcgggcttccagcggcaaaggtg
cgggagcggcttggcgccctcgacaatgaaaaagcgatcagcctcatcgcccttcattcg
caccgtattccgcatgtcttccgccccgatgcccttgtcgaagcggagcgggcgcgcccc
gacagcatggcgcatcgagaggattggcgcgctattcaactgctgaccatcgatccagcg
gatgccaaggatcacgacgacgcggtccatgccgagcgcgatccagatcccgccaatccc
ggcggatatattctgcgcgtggcaatcgccgatgtcgccgcctatgtcacccctggcggg
gcactcgacagcgaggcgcgggagcgaggcaattcggtctatttccccgaccgcgtcgtg
ccgatgctgccggaacggatttccaacgatctttgttcgttgcgcccgaacgaggaccgt
ccggcgctcgccgccaagctcatcattgccgcagatggccacaaactcagtcatgggttc
catcgggtcatgatgcgctcggcggcgaaactctcctacacgcaagcgcagactttgatc
gatgcggcacccggcgcggccaccgaaagccttatgtctgtcctcgttccgctttatgag
gcctatgccgcccttaaaaccgcgcgggacaaacgcggaccgctcgatctcgacctcccc
gaacgcaaaattttgctggacgacaaaggcgccgtgaaggccgttgtgacgccgccaagg
ctcgattcgcatcgcctcatcgaggagttcatgatcctcgcgaatgtcgccgccgccgaa
acgcttgaagcgaaacagcaggcgttcatctaccgggtgcatgacgagccatcgatcgaa
aagatcaacaaccttgcggaatttctggcctcaatcgggctcaaattcaacaaggggcaa
gttctccgggccgcgcaattcaacggcatcctcggccgcgtcaaaggcacggacaacgag
catctcgtcaatgaagtggtgctgcggactcaggcgcaagcagagtatgccgtcgacaat
tacggccatttcggtctcaacctgcgccgctatgcgcatttcacctcgccgatccgccgt
tatgcggatctcatcgtccatcgcgccttgatcctcgccctaaatctcgggccggatggt
ttgccggtgagcgccaacaaggaactcgccgaaatcgcggcggcgatttccgccgccgaa
cggcgtgccatggcggccgaacgcgagacctccgaccggctgatcgctgcccatcttgca
gatcagatcggagccacattcgaaggccgcatttcgggagcctctagcgccgggctgttc
gtcaaactcgatgggaccggcgccgatggctttatcccggccgccatgctcggcgacgat
tatttccggcatgatgcggcccgccatgcgctgatcggctcgcgcactgggcaaatgcac
cgcctaggcgatgtcgtgaccgtgcgactggtggaggctgcgccactcgctggtgcgctg
cgctttgaactgctgaaagaaagcactccgcgccacacgaggtcaaaggcggctaaaggc
caacgctcggcgcgccgcggaaagcttggagtctccgacactctgccatcgagagcgaag
gcatcgaagcggtga
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