Methylophilus sp. DW102: MTDW_05210
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Entry
MTDW_05210 CDS
T10702
Symbol
pcnB
Name
(GenBank) polynucleotide adenylyltransferase PcnB
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
medz Methylophilus sp. DW102
Pathway
medz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
medz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MTDW_05210 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
medz03019
]
MTDW_05210 (pcnB)
Enzymes [BR:
medz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
MTDW_05210 (pcnB)
Messenger RNA biogenesis [BR:
medz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
MTDW_05210 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol_arg_C
PolyA_pol
PolyA_pol_RNAbd
Gad2
Motif
Other DBs
NCBI-ProteinID:
BEV07221
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All DBs
Position
563360..564706
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AA seq
448 aa
AA seq
DB search
MIKQLLQKVFRRRASANTHTQLPAAQIIQAGKHKINQKHISQAALKTCDQLQKAGFQAYI
VGGAVRDLLLDHPPKDFDVATNATPEQVHKVFRRSRIIGRRFRLVHVLWGHETIEVSTFR
GHHLSEGDAETNDSGRIIRDNVFGSIEEDAVRRDFTANALYYDPKRQEVLDFHNGVADIR
AKTLRIIGDPIKRYQEDPVRMLRAVRLSAKLGLKLERDTETPIRKLADLLEDVPPSRLFD
EMLKLFLSGHAIESINALRAQQLHHGLLPLLDVILEQPMGEKFVMLALKNTDERISSGKS
SNPSFLFATLLWHEVLLAWQENQKRGEHMIPALHEAMNEVIDKQAEKMAIHNRYTTTMKE
IWAMQPRFEQRSGKRPYALLTHPRYRAGYDFLLLRCASGELPQEIGDWWTRFADAGTEER
TAMLLPESGPKKRRRKPRKKKPAGGDLA
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atgattaaacaattactgcagaaagtattccgtcggcgtgccagcgcgaatacacacact
caattgccagcggcacaaatcatccaggcgggcaagcacaaaatcaaccagaaacatatc
agccaggcggccctcaaaacctgcgaccagctgcaaaaggccgggtttcaggcttatatc
gtcggcggcgcagtgcgcgatttgctgcttgatcatccgcccaaagactttgatgtggca
accaatgccacccctgagcaggtgcataaggttttccgccgttcgcgtattattggccgc
cgtttccggctggtgcatgtgttatgggggcatgagactatagaagtgtctacctttcgc
gggcatcacctgagtgagggcgatgctgaaaccaatgacagtggccgtatcattcgcgat
aacgtgtttggcagcatagaagaggatgcggtgcgccgcgacttcaccgccaatgcttta
tattacgaccccaagcggcaggaagtgctcgattttcataatggggtggccgatattcgt
gccaaaaccttgcgtatcatcggcgacccgatcaagcgttatcaggaagacccggtgcgt
atgttgcgcgccgtgcgcttgtcagccaaactgggcttgaagttggagcgagataccgag
accccgattcgcaagctggccgatttacttgaagacgtgccgcctagccgcttgtttgat
gaaatgcttaagctgttcttgtccgggcatgccattgaaagcatcaatgctttacgtgcg
caacagttacatcacggcttgttgccgttgctggatgtgatacttgagcagcccatgggc
gagaagtttgtcatgctggcgcttaagaataccgacgagcgcatttcgtccggcaagtca
tccaaccccagctttttgtttgcaaccttgttgtggcatgaagtcttgcttgcctggcaa
gaaaaccagaagcgtggcgaacatatgattcctgcgctgcatgaggcgatgaacgaagtc
atcgacaagcaagccgagaagatggcgattcataatcgctatacgaccaccatgaaagaa
atctgggccatgcagccgcgctttgaacagcgctcgggcaagcggccatatgccttgctc
acgcatccgcgttatcgcgccggctatgattttctgctgttgcgctgtgcctctggcgag
ctgccgcaagaaatcggtgactggtggacgcgttttgccgatgccgggacagaagagcgt
accgctatgctgctaccggaaagcggaccgaaaaaacgtagacgcaagccacgcaagaaa
aaaccggcgggtggagacctggcctga
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