Methylophilus sp. DW102: MTDW_16190
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Entry
MTDW_16190 CDS
T10702
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
medz Methylophilus sp. DW102
Pathway
medz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
medz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MTDW_16190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
medz03019
]
MTDW_16190
03009 Ribosome biogenesis [BR:
medz03009
]
MTDW_16190
Enzymes [BR:
medz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MTDW_16190
Messenger RNA biogenesis [BR:
medz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MTDW_16190
Ribosome biogenesis [BR:
medz03009
]
Prokaryotic type
rRNA processing factors
MTDW_16190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
zf-C2HC
Motif
Other DBs
NCBI-ProteinID:
BEV08319
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All DBs
Position
1794002..1796725
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AA seq
907 aa
AA seq
DB search
MKRMLFNATQSEELRVAIVDGQKLIDLDIEHAGKEQRKSNIYKGVITRIEPSLEAAFVDY
GTDRHGFLPFKEIARSYFQEKPDQGRARIQDVIKEGQEVIVQVDKDERGSKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRVEGEDRNELRDTMAQLEVPNGMSIIARTAGIGRNAEELQ
WDLNYLTQLWQAIEDASNFQPGAYLIYQESSLVIRAIRDYFSADIGEILIDTADVHEQAL
QFMNHVMPGNVTRVKLYQDEIPLFSRFQIEHQIESAFAREVRLPSGGAIVIDHTEALVSI
DVNSGRSIKGADIEQTAFNTNLEAAEEVARQMRLRDLGGLVVIDFIDMENQRNQRDVENA
LRDALHHDRARVQMGKISRFGLLEMSRQRLRPSLGETNHMTCPRCNGTGHIRGIESTALH
ILRITQEEAMKDNSAIIQVQLPVEAATFLLNEKRADIHKIEQRTGVEVILIPNIHMETPN
YNILRIRHDDVNEETTQASYKMVDLPSESDYQHRLEQAAAPAKAEALVKGITPATSAPIV
EEKPAPAPVQVTEQKKSFFGVIKSWLGLDEKEVVPSEPEKPARESKEHGRDRNKNRNRRD
RQRDRGQERNERPANERTGKEQQETQHGSKPRQERPAQEKPAQRERQERQANQEVKAETN
QPALTAQSGDNKQERGERGNRRNRHGRRDRRNRDEAPNQNLVESENSVVTETAASVNLAA
APVVADTVPTFAVAETTATVSPAEVVAAAPVVENPAAAVEAPVEDTAIQSADDNQTEAPK
AQKPARNRSRAGKPAGKAKAKQADQAVDTSGIELVETAATSSSVVTEVTEAPAEAKKKPA
RKRKPSAAKTTETQVDSGIQLVETKAEVVNTGVEATQKTKKPRNAAKWKKDDASTGEDGL
VMVETQK
NT seq
2724 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgtttaacgcaacgcaatcagaagaattgcgcgttgcgatcgtcgat
ggacaaaaactcatcgatctggatattgaacacgctggtaaagaacagcgcaaaagtaat
atctacaaaggggtgatcacccgtattgaaccgtctctcgaagccgcatttgtcgactac
ggcactgatagacacggctttttgccgttcaaggaaattgcccgcagttacttccaagaa
aaaccagatcaaggacgcgcccgtattcaggacgtgatcaaagaaggtcaggaagtcatt
gtgcaggtagacaaagacgagcgcggcagcaaaggcgctgcgctgactacctttatctcg
ctggctggccgttacctggtcttgatgcccaacaatccacgcggaggcggtgtctcgcgt
cgtgtggaaggtgaagatcgcaatgagttgcgcgacaccatggcgcaactggaagtgcct
aacggcatgagcatcattgcccgcactgctggcattggccgcaatgcagaagagctgcaa
tgggatttgaattacctgacccaattgtggcaagcgattgaagatgcctccaatttccag
cctggcgcttacttgatttaccaggaaagcagcctggtgatccgcgccatccgtgactac
ttcagtgctgatatcggtgagatcctgattgataccgctgacgtacacgagcaagccttg
cagttcatgaaccacgtgatgccaggcaatgtcacccgcgtcaaactgtatcaggacgaa
attccgctgttctcccgcttccagatcgaacatcagatcgaatctgcgtttgcgcgtgaa
gtacgtctgccttccggtggcgccatcgtaatcgaccacaccgaagcactggtgtccatc
gacgtcaactctggccgctccatcaaaggcgcagatattgaacaaaccgcgtttaatacc
aaccttgaagcggccgaagaagtggcacgtcagatgcgtctgcgtgacctgggtggcctg
gtggtcattgactttattgacatggaaaaccagcgcaaccagcgtgatgtcgagaacgcc
ctgcgcgacgccttgcatcacgaccgcgcacgcgtgcaaatgggcaagatttcacgcttt
ggcctgttggaaatgtcccgccagcgcctgcgtcctagcctgggcgaaaccaaccacatg
acctgtcctcgttgtaacggtaccggtcatatccgcggtatcgaatccacggccctgcat
attctgcgcatcacgcaggaagaggccatgaaggacaacagcgccatcattcaggtacag
ttgccggttgaagccgccaccttcctgctcaatgaaaaacgtgccgacatccacaagatt
gaacaacgtaccggcgtggaagtgatcctgattcctaacatccatatggaaacgccaaat
tacaacatcttgcgtatccgccatgatgatgtgaacgaagaaaccacgcaagccagctac
aagatggtggacttgccaagcgagtctgattatcagcatcgcctggaacaggctgcagcc
ccggccaaagctgaagctctagtcaaaggcattacgcctgcgacatcggccccgattgta
gaagagaaacctgcgcctgcgccggtacaagtgactgagcagaaaaagtcattctttggc
gtgatcaagtcctggcttggtctggacgaaaaagaagtggtgccctcagaacctgaaaaa
ccagcgcgcgaaagcaaagagcatggccgtgaccgaaacaaaaaccgtaaccgtcgtgac
cgtcagcgtgaccgcggccaagagcgtaatgagcgtccagccaatgaacgtacaggcaaa
gagcaacaggaaacgcagcatggtagcaaacctcgccaggagcgtccggcacaggaaaaa
cctgcgcagagagaacgtcaagagcgccaagccaatcaagaagtcaaagcagagaccaat
cagcccgcattgaccgcgcaatcaggcgacaacaagcaggaacgtggtgagcgcggcaac
cgccgtaaccgtcatggccgccgtgatcgccgtaaccgtgatgaagcacctaaccagaac
cttgtagagtctgaaaacagtgtggtgactgaaactgctgcatccgtcaatcttgccgct
gcaccagttgttgctgacacagtgcctacgtttgcggtggcagaaacaactgccacagtt
agcccagcagaagtagtggctgccgcaccagtagtggagaacccggctgccgcagtggaa
gcgcccgttgaagacaccgccatccaaagcgcagatgacaatcagactgaagcgcccaag
gcacaaaaacctgcgcgcaatcgttcaagagcaggcaagccagcaggaaaagccaaagcg
aaacaggctgatcaggcggtagacaccagcgggattgaattggtggaaaccgctgcaacg
tcctcctctgtcgtgactgaggttacagaagccccagcggaagcgaaaaagaaaccggcc
cgtaaacgcaaaccgtccgcggcaaaaaccacagaaacccaagtagacagtggcattcaa
ctggtagaaaccaaagcagaagtggtgaatacaggtgttgaagccacccagaaaaccaaa
aagccacgtaatgcggctaaatggaaaaaagacgatgccagcaccggtgaagatggactg
gtcatggtagagacgcagaagtaa
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