Methylophilus sp. DW102: MTDW_16980
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Entry
MTDW_16980 CDS
T10702
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
medz Methylophilus sp. DW102
Brite
Enzymes [BR:
medz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MTDW_16980 (hrpA)
Messenger RNA biogenesis [BR:
medz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
MTDW_16980 (hrpA)
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
BEV08398
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Position
complement(1875054..1879106)
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AA seq
1350 aa
AA seq
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MTAVSPIQLISQLEKQLPQCMLADRFPLKRRLQQLRDALKQNKPVDKALVELAHKVQASQ
QRLQARQAALPQPDYPPELPVSGKKDEIAAAIAKHQVVIVCGETGSGKTTQLPKICLELG
RGVSGLIGHTQPRRIAARSVASRIAQELQSPLGEVVGYKVRFNDKLSERSYVKLMTDGIL
LAETQSDKFLNGYDTIIIDEAHERSLNIDFLLGYLKQLLPKRPDLKIIVTSATIDADRFS
NHFDGAPVIEVSGRTYPVEIRYRPLGNKTTMVAVEVPIDDGLDDIDRFAQDLMGIKRKPP
RTETRWLEEDDEEEVMEDAILDTAEDLLRLGDGDILVFLPGEREIRDTAEHLRKYQGRSP
KLKSIEILPLFARLSIEDQQKIFRPSGQRRIVLATNVAETSLTVPGIKYVIDTGLARVNR
YSPRAKVEQLQIEKISQAAAKQRAGRCGRVSNGICVRLYGEDDFNQRPAFTDPEILRSSL
ASVILRMADLRLGDVGEFPFIEAPSSRLISDGYQLLQELGAVTERREITELGRQMARLPL
DPRVARMILTAKKEGCVREILIIASVLSIQDPRERPMDKREAADNAHAKFKADDSDFMSY
LKLWDWYEQALKSKKSNRDLLNQCHQNFLSFLRLKEWRELHAQLLEMVDELDIKPNQQEA
NYVQIHRALLSGLLGNIGFKDGDSETYAGARGIRFTVAPGSVLKKNRPKWVMAAELVDTT
KLYARCVAKIDPDWIEPIAHEGGGRGITQSHYSDPRWDRKTAQVVAWERVSLYGLTIVPK
RRVHYGPIAPTEAREIFIREALANMEFDTRAPFFEANRRLIAEVEALEHKARRQDVLVDE
HQLFVFYDQVVPPIADSYRVYNGAAFEKWRQDAEKANPKVLYLTRESLMRHGASAITEIQ
FPETMVVDGEVVPLKYRFEPGHVLDGVTATIPLALLNQLDATVTEWLVPGMVRDKVTALI
KALPKTLRRVCVPVPEFVTGFLESKQTAQPLLPALAEFIQQKTGLKLKPEEFDLAGLEPH
HRMNFSVIDEKGRELGMGRDWNQLKKQLGSAAQLTFRTGSPGIEKSGLKQWDFGDLPATL
TFSKDGRQLTGYPGLEDNGDSVAIKLFDTPEAALAAHRKGVCRLMRFELKEQVKQLEKGL
PGFNQYALLLRAIMNPDQLREDMLQCIADRAFIAEDDLPRSNAEFMQLKTRARTRLPAVT
EALTRQAQLIANEYQVLVAQLQKMTPVTQKIKRECEQQLQGLLYPGFFSQTPWEQLPHLP
RYLKAIKLRIDKYPTSIERDGRHAQALVQLEQRWQQKIEQLRKAHLPVTIQLQDFAWQLQ
ELRVSLFAQELRTPYPVSIKRLEKLWQEMQ
NT seq
4053 nt
NT seq
+upstream
nt +downstream
nt
atgactgccgtctctcccatccaactcatcagccaactcgaaaaacaactcccccagtgc
atgctggctgatcgctttccgctcaaacgtcgtttgcagcagctacgcgatgctttaaaa
caaaataaacccgtggataaagcgctggtggaacttgcacacaaggtacaggcttcccag
cagcggttgcaggcgcgtcaggcggcattgccccagcctgattacccgccagagttgcca
gtgagtggcaaaaaggatgagattgcggcggcgattgccaagcatcaggtggtgatcgtt
tgtggtgaaaccggttcgggtaagaccacacaattacctaaaatctgcctcgagctcggt
cgtggggtgagtggcttgattggacatacgcagccacgccggattgcggcgcgctcggtg
gcgtcgcggattgcgcaggagctgcaaagtccgctcggtgaggtggttggttacaaggtg
cgctttaatgacaaattgtccgagcgcagttacgtcaagttgatgacggacggcattttg
ctggcggagacgcagagcgataaattccttaacggctatgacaccatcattatcgacgag
gcgcacgagcgcagcctgaatattgattttctgttgggctatctcaaacagttactcccc
aagcggccagatttgaaaatcatcgtcacctcggcgacgattgatgcagaccgcttctcg
aaccactttgatggcgcgccagtgattgaagtgtctggccggacttatccggtggaaatt
cgttaccggcccttgggcaacaagaccactatggtggccgtggaagtgccgattgatgat
gggttggatgatatagaccgttttgcgcaggacctgatgggcatcaagcgcaagccgccg
cgtaccgagacgcgctggctggaagaggatgacgaagaggaagtcatggaagatgccatc
ctcgataccgccgaggatttgttgcgtctgggggatggcgatattctggtgtttttgccg
ggtgagcgtgaaatccgtgataccgccgagcatctgcgtaaataccagggccgctcgccc
aagctgaagtctattgagattttgccgctattcgcgcgcttgagtatagaagaccagcaa
aagattttccggcccagcggccagcgccgcattgtgctggcgaccaacgtggcggaaacc
tcgctaaccgtgcctggcatcaagtatgtgattgataccggactggcccgagtcaaccgc
tatagcccacgtgccaaggttgagcaattgcagattgaaaaaatctcgcaagcggcagcc
aagcagcgggcagggcgctgcggccgtgtgtctaacggcatttgcgtgcgtttgtacggc
gaggatgattttaaccagcgtccggcgtttaccgatcccgagattctgcgtagctcactg
gccagcgtgattttgcgcatggcggatttacggctgggggatgtcggtgaattcccgttt
attgaggcgccttcttcacgcctgatcagcgatggctatcagttgctgcaagagctgggg
gcggtgaccgagcgtcgtgagatcaccgagctgggtcggcagatggcgcgcttgccgctg
gatccgcgtgtggcgcgcatgattctgaccgcaaaaaaagaaggctgcgttcgcgagatt
ctgatcattgccagcgtactcagcattcaggatccgcgggagcggcccatggataaacgc
gaggccgccgacaatgcgcatgccaaattcaaggcggatgactctgactttatgagttat
ctcaagttgtgggactggtatgagcaggcgctcaaaagcaaaaagtccaaccgtgatttg
ctcaatcagtgccaccagaattttctctcgtttttacggctgaaggaatggcgtgagttg
catgcgcagttgctggaaatggtggatgagcttgatatcaagcctaatcagcaagaagcg
aattatgtgcaaatccatcgtgcgttactgtccggcttgcttggcaatatcggctttaaa
gatggcgatagcgagacctatgccggcgcgcgcgggatccgctttaccgttgcaccaggt
tcggtgctcaagaaaaaccgccccaagtgggtgatggccgccgagttagtcgacaccacc
aagctgtatgcccgttgcgttgcaaaaattgatccggactggatagaaccaattgcgcat
gaaggcggcggccgtggcattacacaaagccattacagcgacccgcgctgggaccgcaaa
accgcgcaagtggtggcctgggagcgcgtgagcttgtacgggctgaccattgtgcccaaa
cgccgcgtacattatgggccgattgcgccgaccgaagcgcgtgaaatttttatccgtgaa
gccctggccaatatggaatttgacacgcgggccccgttttttgaagccaaccgccgcctg
atcgccgaagtggaggctttggagcataaagccagacgtcaggacgtgctggtcgacgaa
caccagttgtttgtgttttatgaccaggtggtgccgccgattgcagactcttaccgtgtc
tataatggcgctgcgtttgaaaagtggcggcaggacgctgaaaaagccaatcccaaggtg
ttgtacctgacgcgcgaatcgctgatgcgccatggcgccagtgccattaccgagatacag
tttcccgagaccatggtggtagacggcgaagtcgtgccacttaaataccgctttgaaccc
gggcatgtgctggatggggtgacggcgacgataccgctggccttgctcaatcagcttgat
gccaccgtcactgaatggctggtgccgggcatggtacgtgacaaggtgacggcactgatt
aaagccttgcccaaaaccctgcgccgcgtctgtgtcccggtgccggagttcgtgaccggc
ttcctcgaatccaagcagactgcgcagccattattgcccgctctggctgagtttatacag
caaaaaaccgggcttaagctcaagccggaagagtttgacctggcgggcctggaaccgcat
caccgcatgaactttagcgtgattgacgaaaaaggccgtgagttaggcatgggccgcgac
tggaaccagctcaaaaaacaactgggttcggccgcccaactgacgtttagaaccggctcg
cccggcattgaaaaatccggactcaagcagtgggattttggcgacttgccagccaccctt
acctttagcaaagatggccgccaactgaccggctatccgggcctggaagacaatggtgac
agcgtggccatcaaactgtttgatacgccagaagctgccttggccgctcaccgtaaaggc
gtctgccgcctgatgcgttttgagctcaaggagcaggtcaaacaactggaaaaaggcctg
ccaggctttaaccagtatgccttgctgttgcgcgccatcatgaatcctgaccagttgcgt
gaagacatgctgcaatgtattgctgaccgcgcctttattgccgaggacgacttgccgcgc
agcaatgccgagtttatgcaactgaaaacacgggcgcggacccgcttgccagcggtgacc
gaggcgctgacccggcaggcgcaactgattgccaatgagtatcaggtgctggttgcccag
ttacagaaaatgacgccggtgacgcagaaaataaaacgcgagtgcgagcaacaattacag
ggtttgttgtatcccggtttttttagccagaccccgtgggagcaattgccgcacttgccg
cgttatctcaaggcgatcaagctgcgcatagacaaatatccgaccagcatagagcgtgat
ggccgccatgcgcaggcgctggtacaactggagcagcgctggcagcaaaaaattgagcaa
ttgcgcaaggcgcatctgcctgtaaccatccagttacaagactttgcgtggcaattacag
gagttgcgtgtatcattatttgcgcaggaattaaggacgccttatcctgtctcaatcaaa
cgtcttgaaaaactctggcaagaaatgcaatag
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