Methylophilus sp. DW102: MTDW_18780
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Entry
MTDW_18780 CDS
T10702
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
medz Methylophilus sp. DW102
Brite
KEGG Orthology (KO) [BR:
medz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
medz03009
]
MTDW_18780 (rlmD)
Enzymes [BR:
medz01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
MTDW_18780 (rlmD)
Ribosome biogenesis [BR:
medz03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
MTDW_18780 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRM5-TYW2_MTfase
TRAM
Methyltransf_11
MTS
Methyltransf_15
Methyltransf_23
Methyltr_RsmB-F
KH_PARP14_4
Methyltransf_4
Motif
Other DBs
NCBI-ProteinID:
BEV08578
LinkDB
All DBs
Position
complement(2065309..2066682)
Genome browser
AA seq
457 aa
AA seq
DB search
MRNSRQRSSNLSPAAKAAQTPRRASIESLDQEGRGVAHVDGKVIFIEGALPFEEVLFVSH
HVKSTYELATATEVLKASSQRVTPGCAYFGICGGCAMQHLEFSAQVAAKQRMLENDLWHI
GRVKPAKILPPIQGTPWHYRHKARLRVRYVEKKGGVLVGFNEKGSSYVTFMDSCEVLTQP
VSDLILPLKALIGQLSVKQSLPQIELAVGEDATVLVLRILEALTEDDVALLKTFEEAHGV
QMWTQTKGPDTVKPLFDHGDKLHYSLPEFGLEYPFNPTEFTQVNPAINRVMIRRAMQLLQ
PQAGERIADFFCGLGNFTLPIARSGATVYGVEGAQALVKRAIENAGLNGVTNVEFAESDL
FDMTPESLLALGAFDKWLIDPPRDGAIELIKALPEAEDPNDSHAPSRIVYVSCNPSTLAR
DAAILTQVKGYRLEAAGVMNMFPHTAHVESIAVFEKD
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atgagaaatagccgtcaacgatcatccaatttatcccccgctgccaaggcagcgcaaact
ccgcgccgtgccagcattgaatcactcgaccaggaaggacggggcgttgcccatgtcgat
ggtaaggtgatttttatcgaaggggccctgccatttgaagaagtcctgtttgtttcgcac
catgtcaaatcgacttatgagctggcgaccgcgactgaggtgctgaaagcttcgagtcag
cgcgtaaccccaggctgtgcttattttggcatttgcggtggctgtgccatgcaacatctg
gagttttcggcacaggtcgcagccaagcaacgcatgctggaaaatgatttatggcatatt
ggccgcgtcaaaccagccaagattttaccgcctattcagggcaccccttggcactaccgg
cacaaagcccgtttacgcgtgcgctatgtcgagaaaaagggtggggtgctggtgggcttt
aatgaaaagggcagcagctatgtcacttttatggacagctgtgaagtcctgacccaaccg
gtgtcggatttgatcttgccgttgaaagcgttgattggacagctctcagttaaacagtcg
ctgccacagattgaactggcggtaggtgaagatgctacggtactggtgctacgcattctg
gaagcgctgaccgaggacgatgtggccttgctgaaaacctttgaagaggcgcatggtgtg
caaatgtggacgcaaaccaaaggtcccgacacggtcaagcctttgtttgatcatggcgat
aaattgcactacagcctgcctgagtttggtttggagtatccctttaatccgacggagttt
acgcaggtcaaccctgccatcaaccgcgtcatgatccgtcgtgccatgcagttgttgcag
ccgcaggcgggtgagcgtatcgccgattttttctgtgggctcggtaattttaccttgccg
attgcgcgcagtggcgccacggtatatggggtggaaggtgcgcaggcgctggtgaagcgg
gcgattgaaaacgcaggcctcaatggcgtgaccaatgtcgagtttgccgagtctgatctg
tttgatatgacgcctgagtcattattggccttgggcgcgtttgacaaatggctgattgat
ccaccgcgtgatggtgcgattgaactgatcaaggcattgcccgaggctgaggatccgaat
gacagtcacgcgccctcgcgcattgtttatgtctcttgtaacccttccacgctggcacgc
gacgctgccattctgactcaggtcaagggttaccgcttagaggcggccggggtgatgaat
atgtttccgcatacggcgcacgttgaatcgattgctgtgtttgagaaggattga
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