Methylophilus sp. DW102: MTDW_23330
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Entry
MTDW_23330 CDS
T10702
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
medz Methylophilus sp. DW102
Pathway
medz03030
DNA replication
medz03410
Base excision repair
medz03420
Nucleotide excision repair
medz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
medz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MTDW_23330 (polA)
03410 Base excision repair
MTDW_23330 (polA)
03420 Nucleotide excision repair
MTDW_23330 (polA)
03440 Homologous recombination
MTDW_23330 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
medz03032
]
MTDW_23330 (polA)
03400 DNA repair and recombination proteins [BR:
medz03400
]
MTDW_23330 (polA)
Enzymes [BR:
medz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
MTDW_23330 (polA)
DNA replication proteins [BR:
medz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MTDW_23330 (polA)
DNA repair and recombination proteins [BR:
medz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
MTDW_23330 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MTDW_23330 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Obc1_cap
HHH_5
Motif
Other DBs
NCBI-ProteinID:
BEV09033
LinkDB
All DBs
Position
2533280..2536045
Genome browser
AA seq
921 aa
AA seq
DB search
MKTLLLVDGSSYLYRAFHAMPDLRNSANEPVGAIQGVLNMLRRLHKDYPSDYSACVFDAK
GKTFRDDLYPEYKANRASMPDDLRVQIEPLYETIRAMGWPLIIEEGVEADDVIGALAKQA
EKEGIRTIISTGDKDITQLVNENITVVNTMRDAFRKTDDVLDIAGVENKFGIPPSKIIDY
LTLVGDSVDNVPGVEKVGPKTAVKWLTEYGSLDNIIANADNIKGVVGENLRKALPWLPTA
RELITIRCDIGIREHFDELIPKAPDKPALLALFDHFEFRSLKRDLDKLPDGATAPLIENS
VLPTVEELSGQAGGDYSPDTRRLYQTILSDSELEPWLTKLEQAALLCFDTETTSLDPMQA
KIVGVSFSVTPGEAAYIPLTHDYFDAPPQLALTATLAKLKPILENPDIKKVGQNLKYDMH
VLANHGITLQGIAHDTLLQSYVFESHKGHGMDELSERHLGIAPISYESVAGKGAKQVSFS
QVTVEVAAEYAAEDADITLQLHQALYPQVTVSDKLRFIYEQVEMPSMQVLQRMERNGVLI
DSHMLNRQSNEIGLRLMEIEKQAYELAGQPFNLGSPKQLQEILFGKLGIKPLKKTPSGAP
STDEDVLQELALDYPLPKVILEHRSLAKLKSTYTDKLPKMINAQTGRVHTNYNQAVAITG
RLASSDPNLQNIPVRTAEGRRIREAFIAPPGSQIISADYSQIELRIMAHLSQDAGMLTAF
ANNEDIHRATAAEIFGVDKAAVDNEQRRYAKVINFGLIYGMSAFGLAQNLNIERGAAANY
IERYFARYPGVKAYMENTRALAKQQGYVETYFGRRLWVPEINSANVQRRNGAERAAINAP
MQGTAADLIKLAMIAVDQWLTEQKLQTKLIMQVHDELVLEVPEHELALVKQTLPVLMQEV
ATLSVPLLAEVGVGNNWESAH
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaccctgctgctggtcgatggctccagttatttataccgcgcgtttcacgccatg
ccggatttacgcaactcggccaacgaaccggtcggggcgattcaaggcgtgctgaatatg
ttacggcgcctgcacaaggactatccttctgactatagcgcctgtgtgtttgacgccaag
ggcaaaaccttccgcgacgatctctatcccgaatacaaggccaaccgcgccagcatgccg
gacgatttgcgcgtgcagattgaaccgctatacgaaaccatccgcgcgatgggctggccg
ctgattattgaagaaggcgttgaagccgacgatgtgattggcgcactggccaagcaggcc
gaaaaagaaggtatccgcaccattatctcgactggcgataaagacatcacgcaactggta
aatgaaaatattaccgtggtcaacaccatgcgtgatgccttccgtaaaaccgatgatgta
ttggatattgccggcgtagaaaataaatttggcatcccgcccagcaaaattatcgactac
ctgacattggtcggtgacagtgtagacaatgtgcctggggtcgaaaaagtcggcccaaaa
acggcggtcaaatggctgacagaatatggctctctcgacaatatcattgccaatgccgac
aacatcaaaggcgtggtcggcgagaacttgcgcaaagccctaccctggttacccacggca
cgcgaattgatcaccatccgctgtgatatcggtatccgtgagcattttgatgaactgatc
cccaaagccccggacaagcctgcactactcgcgctgtttgaccattttgagttcagaagc
ttgaagcgtgacttagacaaattgccagacggtgccacagcaccattgattgaaaattca
gtcctaccgaccgtcgaggagcttagcgggcaagccggtggcgattactcgccggatacg
cgacggctttaccagaccattttatcggacagtgaactggaaccgtggctcaccaaactg
gaacaagccgccctgctttgctttgacactgagacgacctcactggaccccatgcaagcc
aaaattgtcggcgtctcgttcagcgtcacgccgggggaagcggcttacatcccgctcacc
catgattactttgatgcgcctccacaactggctttgacggcgaccctggccaaactcaaa
cccatccttgaaaacccggacattaaaaaagtcggccagaaccttaaatacgatatgcat
gtgctggccaatcatggcatcacgctgcaaggcattgcgcacgacaccctgttgcaatcg
tatgtgtttgagagccacaaagggcatggcatggatgagctcagcgagcgccatctgggc
attgcccccatcagctacgaaagcgtggcgggcaaaggcgcaaaacaagtgtcgttcagc
caggtcaccgtcgaggtggctgccgaatatgccgcggaagacgccgacatcacgctgcaa
ctgcatcaggccctgtacccgcaagtgacagtctcggacaaactgcgctttatttatgag
caggtggaaatgcccagcatgcaagtgttgcaacgcatggagcgcaacggcgtgttgatc
gacagccacatgctcaaccgccagagcaatgaaattggcctgcgtttgatggagattgaa
aaacaggcgtatgagctggccggacaaccgtttaacctgggttcgcccaagcagttgcaa
gaaatcctgtttggcaaactgggcatcaaacccttgaaaaaaacgccttctggcgccccc
agtaccgacgaagatgtattgcaggaactggcgctggattacccgttgcccaaggtaatc
ttggagcaccgcagcttggccaagctgaaatccacctacaccgacaagttgccgaaaatg
atcaacgcgcaaaccgggcgcgtgcataccaactacaaccaggcggtggcgattaccggg
cgattggccagctctgaccccaacctgcaaaatattccggtgcgcaccgccgaaggccga
cgcatccgcgaagcttttatcgccccgcccggtagccagatcatctcggcggactattcg
cagattgagctgcgcatcatggcgcatctctcacaagatgccgggatgctgacggccttt
gccaataacgaagacatccatcgcgccacggccgcagaaatttttggcgtggacaaagcc
gccgtagacaacgagcagcgacgctacgccaaagtgattaactttggcctcatctacggc
atgagtgcgtttggcctggcgcaaaacctcaatatcgagcgcggcgcggcggccaattac
attgaacgctattttgcgcgttaccccggtgtcaaagcctatatggaaaacacgcgcgca
ctggccaagcagcaaggctatgtcgaaacctacttcggcagacgcttatgggtgcctgaa
atcaacagcgctaacgtacaaagaagaaacggcgccgaacgcgccgccattaatgccccc
atgcaaggcacggcggccgacctgatcaaactggcgatgatcgccgtcgaccaatggctg
accgagcaaaaactgcagaccaaactcatcatgcaggtgcacgatgaactggtgctggaa
gtgcctgaacatgaactggcattagtcaaacagaccttgcccgtgctcatgcaagaagtg
gcaaccttatcagtgccgttactagccgaggtcggcgtaggcaacaattgggagagcgcc
cactag
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