Methylophilus sp. DW102: MTDW_27560
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Entry
MTDW_27560 CDS
T10702
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
medz Methylophilus sp. DW102
Brite
KEGG Orthology (KO) [BR:
medz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
medz03000
]
MTDW_27560
Transcription factors [BR:
medz03000
]
Prokaryotic type
Helix-turn-helix
Other families
MTDW_27560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
AAA_lid_14
GAF
HTH_8
HTH_30
AAA_5
AAA_2
HTH_Tnp_ISL3
HTH_Tnp_1
HTH_28
HTH_23
HTH_7
Mg_chelatase
HTH_11
AAA_3
Phage_CP76
HTH_AsnC-type
HTH_20
HTH_29
HTH_22
HTH_IclR
HTH_26
HTH_24
DUF2089
RsmI_C
Motif
Other DBs
NCBI-ProteinID:
BEV09456
LinkDB
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Position
complement(2962540..2964555)
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AA seq
671 aa
AA seq
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MINARDSVQDSLYCSQLCHTGTVVQSDVTGVQFSMPNKYSPSSTPLPQAGLRDDQRAIAE
AIARSWRRCMVKGVDEQAPAEDQIITAQELAQRLEKNRLLLAQAEPEMITLSEQIAHTRS
LVILTDNEGVILRTMGEGVDENQIRASLLPGASWSEEHRGTNAIGTALVERLAISVQGAE
HFMAYHHSLSCSAVPIFAANNHLVATLDVSNDLNAPQQHTLALVKMAAQMVENRLFHATA
EGEIAVHFHVRPEFIGTLWEGVALFDAAGQLQTINRSGQFQFGLPLDQDSLSARRIAFED
IFDESWIAFKQRGLNADVLFPLHLRNGARLYARASASQAPSAPKKMPPLAPRESAASLEL
LDSGDPQFKLAITQVKQVLDKDIPVLILGETGAGKELFSRAIHDASARRHKPFIAVNCAA
LPEGLIEAELFGYEEGAYTGAKRKGNLGKIQQADGGTLFLDEIGDMPLSLQARLLRVLQE
RSVTPLGGSKSIPVNFMLLSATNQKLKDKVAAGEFRSDLYYRINGLSVQLPALRERLDMA
RLIQVILQIEQAPQATLSEEVVALFNDHPWPGNVRQLHNVLRTAVALADGGVIGRQHLMQ
DFLDEMHAKKADAEPAAVGMAALPAASLKVQNDEAIRQAMLQHGGNISAVSRQLGLSRNT
LYRRLKALNLS
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgatcaatgctcgagattctgtgcaagatagcctgtactgttcacaactgtgtcatact
ggtacagttgttcaatccgacgtgacaggtgttcagttttccatgcccaacaagtattcc
ccctcctccacccctctgccgcaagcaggcttgcgtgatgatcagcgcgccattgccgaa
gcgattgcccgctcgtggcggcggtgtatggtcaaaggcgtggatgagcaagccccggca
gaagatcagattattactgcccaggaattggcgcagcggctggagaaaaaccgcctgtta
ttggcgcaagccgaaccggaaatgatcaccttgagtgagcaaattgcccatacgcgtagc
ctggtgattttgaccgataacgaaggggtgattttgcgcaccatgggtgaaggcgtggat
gaaaatcagatccgcgcctcattattgcctggcgcgtcgtggagcgaagagcaccggggc
accaatgccataggcactgcgctggtagagcgcctggccatcagtgtgcagggggctgag
cacttcatggcctatcatcattcactcagttgttccgctgtgcctatctttgctgccaat
aaccatttggttgcgacgctggacgtatccaacgacctcaatgcgccgcagcagcatacg
ctggccctggtcaaaatggcggcacaaatggtcgaaaaccggctgtttcatgccactgca
gagggtgaaatcgccgtgcattttcatgtgcggccagaatttattggtaccttgtgggaa
ggggtggcgttgtttgatgcggctggccagctacagacgatcaaccgtagtggtcagttt
cagtttggtttgccgctggaccaggatagcctctctgcgcggcgtattgcatttgaagat
atttttgacgagtcgtggatcgcgttcaagcaacgcggtttaaatgccgatgtcctgttt
ccactgcatctgcgtaatggcgcgcggttatatgcccgcgcctcggcgagccaggcgcct
tccgctccgaaaaaaatgccgccgctggcgccgcgcgagtctgccgccagtctggagctg
ctggacagtggcgacccgcaattcaagctggcgatcacgcaagtgaagcaagtgctggac
aaagacatcccggtgctgatcctcggcgagaccggggccggtaaagaattattttcacgc
gcgattcacgatgccagtgcgcgccgccacaagccgtttattgccgtcaactgtgcggcc
ttgccagaagggctgattgaagccgaactgtttggctatgaagaaggcgcctatacaggg
gccaagcgtaaaggcaatcttggcaaaatccagcaagcggatggcggcaccttgtttctg
gatgagattggcgatatgccattgtcactgcaagcgcgcttgttgcgcgtcttgcaagag
cgcagcgtgacgccgttgggcggcagcaagtctatcccggtcaactttatgctgctcagc
gcgacgaatcagaagttgaaagataaagtggctgcaggcgagttccgcagtgatttgtat
taccgcatcaatggcctcagtgtgcaattgcctgcgctgcgggagcggctggatatggca
aggttaattcaggtcattctgcaaattgaacaggcgccgcaagccaccttgagtgaagag
gtggtggcgctgtttaatgaccacccctggccgggcaatgtacgccagttgcataatgtc
ttacgtacagccgtggcattggcggatggcggcgtgattggtcgccagcatttgatgcag
gattttctggatgaaatgcatgccaaaaaagcagatgctgagccggctgcggtcggcatg
gccgcgttgccagcggccagcctgaaagtgcaaaatgatgaagcgatccggcaagccatg
ctgcaacatggcggcaatatttcagcggtgtcccgtcagctggggttaagcagaaatacg
ctttaccggcgcctgaaagcgctcaatctttcttga
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