Methylomonas sp. EFPC3: PL263_02985
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Entry
PL263_02985 CDS
T10335
Name
(GenBank) RNA polymerase sigma factor RpoD/SigA
KO
K03086
RNA polymerase primary sigma factor
Organism
meec Methylomonas sp. EFPC3
Pathway
meec02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
meec00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PL263_02985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
meec03021
]
PL263_02985
Transcription machinery [BR:
meec03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PL263_02985
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r4_2
HTH_Tnp_ISL3
Motif
Other DBs
NCBI-ProteinID:
WFP51002
LinkDB
All DBs
Position
complement(668942..670171)
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AA seq
409 aa
AA seq
DB search
MSNTAALSFASETVTIADAEPGTLSVRMEQARNRLNQLLLDNQQVSPLIAKRLLNELQRG
IDCSELMIAKNSDEAKRLIELLYKQESLVQNTAANFKAAQEVVQPQNIVQLLDPHRRTVN
QLLYSLHLLPVFLIDSAGDILKTLAADPTLHADYLAELKLAIRELKTIRQQTISANTGLV
AFVAHKYKTNNLSFDDLMQEGLVGLIKAVDRFDAERGICFSTYAIYWIKQAISRLIVKQE
KIVRLPVALAEKASVVFEAMRNCYLKTERWPSIAELKACCDLTEQEIKTISSYYQSTHSL
DATIGDEDDGLDLMAKMQQHQFSLPLDELIDNDLAQYVDKAVASLPEKQAAILTMRFGLH
DHTEMTLQAVADQLHVTRERVRQIQNEALKKLKQQFGFDLMLFLEPKDG
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atgtctaatacagccgcactatcctttgctagcgagacagtcactatcgcggatgccgag
ccaggcaccttaagcgtgcgcatggagcaagcccggaaccgtctcaaccagttattgctt
gataatcagcaggttagtccgctgatagccaaacgtttactcaacgaactgcagcgcggc
atcgattgctccgaattgatgattgcgaaaaattcggacgaagccaagcgcctgatagaa
ctgttgtacaagcaagagtcacttgtacaaaataccgcagccaacttcaaagccgcgcaa
gaagttgtacaaccgcaaaacattgtacaacttttggacccccaccggcgtacagtaaac
cagttgttgtacagtttgcacttgttgccggtgttcctgatcgatagcgccggcgacatc
ctgaaaacgctggccgcagatcccaccctacacgcggactatttagccgaactcaaactg
gcaattcgcgaattgaaaaccatccgccagcaaaccatatcggccaacaccggattggtg
gcgttcgtggcccacaaatacaaaaccaacaaccttagtttcgacgatctgatgcaagaa
ggcttggtcggcttgattaaagcggtcgaccgtttcgatgcggaacgcggcatctgcttt
tcgacttacgctatctattggatcaaacaagccatatcgcgcttgatcgtcaaacaggaa
aaaatcgtgcgtttgccggtggccttggcggaaaaagcctcggtagtgttcgaggccatg
cgcaactgctacctaaagaccgaacgctggccaagcatcgccgagctcaaggcttgctgc
gacctgaccgaacaagagatcaaaaccatcagcagttattaccaatccacacactccctg
gacgcgacaatcggcgacgaagacgacggtctggatctgatggctaagatgcaacagcac
cagttcagtctgccgctcgatgaactaatcgacaacgatctagctcaatacgtcgacaaa
gcggtggcgtcgttaccggaaaaacaggcagcgattctgacgatgcgcttcggcttgcac
gatcacacggaaatgactttgcaagccgttgccgaccaactgcatgttactcgagaacga
gtccggcaaatccagaacgaagcgttaaaaaaattgaaacaacagttcggctttgacctt
atgctatttctcgaacccaaggacggttaa
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