Methylomonas sp. EFPC3: PL263_17065
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Entry
PL263_17065 CDS
T10335
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
meec Methylomonas sp. EFPC3
Pathway
meec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
meec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PL263_17065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
meec03019
]
PL263_17065
03009 Ribosome biogenesis [BR:
meec03009
]
PL263_17065
Enzymes [BR:
meec01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PL263_17065
Messenger RNA biogenesis [BR:
meec03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PL263_17065
Ribosome biogenesis [BR:
meec03009
]
Prokaryotic type
rRNA processing factors
PL263_17065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
WFP49799
LinkDB
All DBs
Position
complement(3782070..3784259)
Genome browser
AA seq
729 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQKLYDFDIEVPSKEQKKSNIYKGIITRVEPSLEAAFVNY
GAEKHGFLPFKEIAPEYRTGDGQEGKSSSKSNIREGQEIVVQIEKEERGNKGAALTTYIS
LAGTYLVLMPNNPKAGGISRRIEGENRSELRETMAALEIPDSMGLIIRTAGSDKNVEELQ
WDLNYLMQLWEAIDRSSQEQTAPFLIFQESNVIIRALRDHLRGDIDEILIDQEGAYKLVH
NFLKQVMPHNLHKAKLYQDSVPLFSRYQIETQIEMAYKREVSLPSGGSIVIDHTEALTSI
DINSARATKGSDIEETALNTNLEAADEIARQLRLRDLGGLFVIDFIDMMSNKNQREVENR
LRDALKIDRARIQTGRISRFGLMEMSRQRLRPSLGDSTQLTCPRCKGQGTIRNVESVTLA
VLRLIEEEAMKKGTERVIAHLPIDCATFLLNEKRASIQEIESRLQVGIIVLPSKHLETPA
YDIERIKATGDSEEKASHLQIKEEDITVPEFAKQLGPKTEKAAIKEFLPDSPAPVQSKKT
SASLIQRFWQRLIGAGKTVENAEAAEKSGEDKAKPGRNNRRDRGERGERGAGRNNNRRNG
NRRPAPAATAGQDTVANLSDEARPAATGELDSGLDNAAKKASGTPDRERSRRSRSRRRGP
RNGAEKRSEPNGIGANGEQHTAESAPPAPADRGEFRNPSRSADSDHAERSPRPAETPRDY
EPVRTAAED
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgcttatcaacgccacgcagcccgaagagctgcgggtggcattggtagat
ggccagaaactttacgatttcgacatcgaagttccatcgaaagaacaaaaaaaatccaat
atttacaaaggcatcatcacccgggtagaacccagtctcgaagccgccttcgtcaactac
ggcgccgaaaaacacggctttctgccgttcaaggaaatcgccccggaataccgcaccggc
gacggtcaggaaggtaaaagctccagcaaaagcaatatccgcgaaggccaggaaatcgtc
gttcaaatcgaaaaagaagaacgcggcaacaaaggcgcggcgctaacgacctacatcagt
ctggccggcacctatctggtgctgatgccgaacaaccccaaagccggcggcatctcccgc
cgcatcgaaggcgaaaaccgcagcgaattgcgcgaaaccatggccgcgctggaaatcccg
gacagcatgggcctgatcatccgcaccgccggttccgacaaaaacgtcgaagaattgcag
tgggatttgaactacctgatgcaactatgggaggcgatagaccgctccagccaggaacaa
acggcaccattcctgattttccaggaaagcaacgtcatcatccgcgcgctacgcgatcat
ttgcgcggcgacatcgacgaaatcctgatcgaccaggaaggcgcctacaagctggtgcat
aacttcctgaaacaagtgatgccgcacaacctgcacaaggccaaactgtaccaggatagc
gtgccgctattcagccgctaccagatcgaaacccagatcgagatggcctacaaacgcgaa
gtttcactgccatccggcggctcgatcgtcatcgaccacaccgaagcgttgacctcgatc
gacatcaactcggcccgcgccaccaaaggcagcgacatcgaagaaaccgcgctcaatacc
aacctggaagccgccgacgaaatcgcccgccaactgcgtttgcgcgacttgggcggcctg
ttcgtgatcgacttcatcgacatgatgtccaacaaaaaccagcgcgaggtggaaaaccgg
ctgcgcgacgcgctgaaaatcgaccgcgcccgcatccagaccggccgcatctcccgcttc
ggcttgatggaaatgtcgcgccaacgcttgcggccgtctttgggcgactcgacccagttg
acctgcccccgctgcaaaggccaaggcacgatccgtaacgtcgaatcggtcacgctggcc
gtactgcgcttgatcgaagaagaagcgatgaaaaaaggcaccgagcgtgtcatcgctcac
ttgccgatcgattgcgccaccttcctgctcaacgaaaaacgcgcctcgattcaggaaatc
gagtcccggctgcaagtcggcatcatcgtgttgccgagcaaacacctggaaacgccggct
tacgacatcgagcgcatcaaagccaccggcgacagcgaagagaaggccagccatttgcag
atcaaggaagaagacatcacggttccggagttcgccaaacaactgggtccgaaaaccgaa
aaagccgcaatcaaggaatttctgcctgactcaccggccccggttcaaagtaagaaaact
tcggccagcctgatccagcgtttctggcaacgcctgatcggcgccggtaaaaccgtcgaa
aacgccgaagccgccgaaaaaagtggtgaagataaagccaaacccggccgcaacaatcgc
cgcgaccgtggtgagcgcggcgaacgtggcgccggccgcaacaacaatcgccgtaacggc
aatcgccgcccggctccagcggcaacagccggccaggacaccgtcgcaaacctaagcgac
gaagccagaccggcagcgaccggcgagctagactcgggactagacaacgctgcgaaaaaa
gcctcaggcacgccggatcgggagcgcagccgccgcagccgtagtcgccgccgaggaccg
cgcaacggcgccgaaaaacgtagcgagccgaatggtatcggcgcaaacggcgagcaacac
accgccgaatccgctccacccgcgcctgccgaccgcggagaattccgcaacccaagccgt
agcgccgacagcgaccatgcggaacggagtccgcgcccggcagaaaccccgcgcgattac
gaacctgtccgcaccgcggccgaagactga
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