Methylomonas sp. EFPC3: PL263_17165
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Entry
PL263_17165 CDS
T10335
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
meec Methylomonas sp. EFPC3
Pathway
meec03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
meec00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PL263_17165 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
meec03400
]
PL263_17165 (mfd)
Enzymes [BR:
meec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PL263_17165 (mfd)
DNA repair and recombination proteins [BR:
meec03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PL263_17165 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
WFP49818
LinkDB
All DBs
Position
complement(3798442..3801897)
Genome browser
AA seq
1151 aa
AA seq
DB search
MNASPLQLPELPKQSTQAHVWRDLAGCGDALALATAIASEKRLAVIVTPDTQTALRLEHE
MAFFLDSAYPILQFPDWETLPYDVFSPLPEIISERLRTLALLPETKRGALIVPISTLMHR
LAPREHILAHSFAIEVGGTLSLDLTRAKLEAVGYQCVSQVYQHGEFAVRGSILDLFPMGS
KQPYRIELFDDDVESIRSFDPDTQMSQDKMQKVELFPAREFPFTDDAIKRFRQAFREQFP
DASPKNNLYVDVSKQIAPAGIEYYLPLFVERTESLFDYLPSSALFVLPAEFETGAGQFYA
EAEERYQQRKYDVDRPLLPPQRLFLATDELVGKTQAFSRIVLNHQGEQGESLHCQTLPDV
AIDSRLKEPAQRLRQFIEGFAGKILFVAETAGHREGLIEKLKSVKLAAKQVQNWPEFLQS
EQSPCIVVAPMDHGLLLDQPKLAIITESQLSGEKVQQRRRRAKSAARALENIFNNLDELT
ISSPVVHQEHGVGRYLGLQTLTVGGIEAEFLMLEYAGGDKIYVPVASLHLIGRYSGVSAE
NAPLHKLGTEQWSKAKQKAMERARDVAAELLDIHAKRAARGGFAFSVDNSDYNAFAGGFP
FEETPDQLSAIEAILQDMAAPQPMDRVVCGDVGFGKTEVAMRAAFVAVQSGKQVAVLVPT
TLLAQQHYQNFRDRFADWPVRIEVTSRFVTAKQQAAIADDLAEGKVDIVIGTHKLLSKDM
KYKALGLVIIDEEHRFGVTQKEHFKKLRSELDLLTLTATPIPRTLNMAMAGLRDISIIAT
PPPNRHAIKTFVSEWIDSQVQEACQREIKRGGQVFFLHNDVKTMDKMMRELAELVPEARI
QIAHGQMAERELEQIMLDFYHQRFNVLIATTIIESGIDIPSANTIVINRADKLGLAQLHQ
LRGRVGRSHHRAYCYCIVPPKTLMTKDAIKRLEAFETSGELGAGFMLSSHDMEIRGAGEL
LGDEQSGQIQEIGFTLYAELLERAVKALKSGKQPELDAPLDYGPEVDLQVAALIPEDYLP
DIHARLVLYKRIASAETEDDLRKLKIEMIDRFGLLPDQVKALFAVTELKQQAAHLGIRKI
EAHATGGRIVFTATPQIDTGELILMIQSQSQVYKFDGADKLRFTQTFKDMEDKVAFLEKL
LARLGTKGSSA
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcgtctccgctacaacttcccgaattaccgaaacagtccacccaagctcatgtc
tggcgcgacttagccggctgcggcgatgcgctggcgctcgccaccgcgatcgccagcgaa
aaacgcttggccgtcatcgtcacaccggacacgcaaaccgcgttgcgcctggagcacgaa
atggccttttttctggacagcgcctatccgatattgcaatttccggactgggaaaccctg
ccctacgatgtgttctcgccgttgccggaaatcatttccgaacgcttgcgtacgctggcc
ctgctcccggaaaccaagcgcggcgcgctgatcgttccgatctcgaccctgatgcaccgg
ctggcgccgcgcgaacatatcctggcccacagttttgccattgaagtcggcggcaccttg
agcctggacctgacccgcgccaaattggaagcggtgggttaccagtgcgtatcgcaggtg
tatcagcacggcgaattcgcggtacgcggctcgattctggatctgttcccgatgggctcc
aagcagccctaccggatcgaactgttcgacgacgacgtcgagtcgatccgcagcttcgac
cccgacacgcagatgtcgcaggacaaaatgcaaaaagtcgaattgttcccggcccgcgaa
tttccatttaccgacgacgcgatcaaacgctttcgccaagcctttcgcgagcaatttcca
gacgcctcgccgaaaaacaatttgtacgtcgacgtctccaagcaaatcgccccggccggt
atcgaatactatttgccgctgttcgtcgagcgcaccgaatcgctgttcgattacttgccg
agcagcgcgctattcgtgctgccggccgaatttgaaaccggtgccggccagttttacgcc
gaggccgaagagcgttatcagcaacgcaaatacgacgtcgacaggccgctactgccgccg
cagcgcctgtttttagccaccgacgaattggttggcaaaacccaagcgttcagccgcatc
gtgctgaaccatcaaggtgaacaaggcgaatcgctgcattgccaaacgctgcccgatgtc
gccatcgatagccgcttgaaagagccggcgcagcgcctgcgccagttcatcgaaggcttt
gccggcaaaatcctgttcgttgccgagactgccggccaccgcgagggcctgatcgagaaa
ctgaaaagcgtcaaactggccgccaagcaagtccaaaactggccggaatttctgcaaagc
gaacagtcgccgtgcatcgtcgtcgcgccgatggatcacgggctgttgctcgaccaaccg
aagctggccatcatcaccgaaagccagctcagcggcgaaaaagtccagcaacgccggcgc
cgagcgaagtcggcggcgcgggcgctggaaaacatcttcaacaacctcgacgagctgacg
ataagctcgccggtcgtgcatcaggaacacggcgtcggccgctatctggggctgcagact
ctgaccgtcggcggcatcgaagccgagtttctgatgctggaatatgccggcggcgacaag
atttacgtgccggtcgcctctctacatttgatcggccgttacagcggcgtcagcgccgaa
aacgcccccttgcacaaactgggcaccgagcaatggagcaaggccaagcaaaaagccatg
gagcgggcccgcgacgtggccgcggaattgctggacatacacgccaaacgcgccgcgcgc
ggcggctttgcctttagcgtcgacaatagcgactacaacgcctttgccggcggcttcccg
ttcgaggaaactccggatcagctcagcgccatcgaagcgattttgcaagacatggctgcg
ccgcaaccgatggaccgcgtagtatgcggcgacgtcggcttcggcaagaccgaagtggcg
atgcgtgcggcctttgtggcggtgcaaagcggcaaacaggtggcggtgctggtgccgacc
accctgctggcgcagcaacactatcaaaacttccgcgaccgctttgccgactggccggtg
cgcattgaagtcacctcccgtttcgtcaccgccaaacagcaagccgccatcgccgacgat
ctggccgagggcaaggtcgacatcgtcatcggcacccataaactgctgtccaaggatatg
aaatacaaggccttgggcttggtgatcatcgacgaggaacaccgcttcggcgtcactcaa
aaagagcatttcaaaaagctgcgcagcgaactggacttgctgacactgaccgcaacgcca
atcccgagaaccttgaacatggccatggccggcctgcgcgatatttccatcatcgccacg
ccgccgccgaaccgccatgcgatcaaaaccttcgtcagcgaatggatcgattcccaagtc
caggaagcctgccagcgcgaaatcaaacgcggcggccaggtatttttcctgcacaacgac
gtcaagaccatggacaaaatgatgcgcgaactggccgaactggtgccggaagcgcggatt
caaatcgcccacggccaaatggccgagcgcgagctggagcaaatcatgctggatttttat
caccagcgttttaatgtgctaatcgccaccaccattatcgaaagcggcatcgacattccc
agcgcgaataccatcgtcatcaaccgggccgacaagctgggtctggcccagttgcaccag
ttacgcggccgggttggccggtcccaccaccgcgcctattgctactgcatcgtgccgccg
aaaaccctgatgaccaaggacgcgatcaagcgtctggaggccttcgaaacctccggcgaa
ctgggcgccggcttcatgttgtcctcgcacgacatggaaatccgtggcgccggcgagttg
ctgggcgacgaacaaagcggccagattcaggaaatcggctttaccctgtacgccgagttg
ctggagcgcgccgttaaagccctcaaatccggcaaacaaccggagctggacgcgcctttg
gactatggcccggaagtcgatctgcaagtagcagccttgattccggaagactatttgccg
gacatccacgcccgccttgttttgtacaaacgcatcgccagcgccgaaaccgaagacgat
ttgcgcaagttaaaaatcgaaatgatcgaccgcttcggcctattgccggatcaggtcaaa
gccttgttcgcggtcaccgaactgaaacaacaagctgcgcatctgggcatccgcaaaatt
gaagcccacgccaccggcggccgcatcgtgtttaccgccacgccgcaaatcgataccggc
gagttgatcttgatgatccaaagccagtcgcaggtgtataaattcgacggcgcggataaa
ttgaggtttacccagacctttaaggatatggaggataaggtggcgtttttggagaagttg
ttggcgaggctggggacaaaaggtagctccgcgtaa
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