Methylococcus sp. EFPC2: JWZ97_05265
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Entry
JWZ97_05265 CDS
T10116
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
meef Methylococcus sp. EFPC2
Pathway
meef03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
meef00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JWZ97_05265 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
meef03400
]
JWZ97_05265 (mfd)
Enzymes [BR:
meef01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JWZ97_05265 (mfd)
DNA repair and recombination proteins [BR:
meef03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JWZ97_05265 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
Cas3-like_C_2
UB2H
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
QSA98228
UniProt:
A0A974VU21
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All DBs
Position
complement(1242319..1245792)
Genome browser
AA seq
1157 aa
AA seq
DB search
MSSPNAPPLSDLPIPTKPGEHTSWRGLYGCGDTLALAQAVQARPGLFLVIAPDMQSVLRL
EHELRFFLPDTLPVLQFPDWETLPYDVFSPLPEIVSQRIRTLALLPEVKRGVLVLTAATL
MQRIAPRGHILARTFALTVGGRLSLETTRQRLEAVGYQCVSQVMEHAEFAIRGSIIDIYP
MGSQTPYRIELFDEDIESIRTFDPESQRSLDKVDKIALYPAREFPFDEDSIKHFRRAYRA
QFPDLPTGSGLYQDISKGIPAGGIEYYLPLFVEHTETLFDYLPDNATLVRHRDVDAAAAE
FYEESLNRFALRKGNIDRPALPVEMLFLDPASLNQRLQGYAGIHIAESAVEPLGEAKSTL
ACRPLPELAIDPKQKQPAAALQNFLTEFDGKLLFVAETTGHREALLDSLGKLSIRPRVIE
RWNDFLATDNKLSLLVAPLDHGLWLTDPPLAIVTETQLSGDKVQQRRRRRKTMERDLSAL
MRNLEELEIGSPVVHQDHGVGRYLGLQRLNVGGMDAEFLALEYANNDKLYVPVSSLHLIS
RYSGSSEETAPLHKLGGEAWQKAKRRAMEKARDVAAELLDIYARREAKQGHAFQALTDDY
AAFAAGFPFEETPDQENAILDVIKDMSSPRPMDRVVCGDVGFGKTEVAMRAAFIAAHNGR
QVAVLVPTTLLAQQHYQNFRDRFADWPIRIEVMSRFVGKKQQDEFARAAAEGKVDILIGT
HKLLQKDIQFKNLGLVIIDEEHRFGVAQKEHFKKLRSELDILTLTATPIPRTLNMALGGL
RDISIIATPPPNRHAIQTFVSEWSDSLTQEAITREIKRGGQVYFLHNKVETIEKMVRELE
ALVPAARIQHAHGQMPERELERIMLDFYHQRFNVLVATTIIESGIDVPSANTILINRADQ
LGLAQLHQLRGRVGRSHHRAYAYLLVPSKKLMTADAIKRLEAIEASGELGAGFLISSHDM
EIRGAGELLGGEQSGQIEEIGFTLYSELLERAVAALKSGKQPELDAPLDGGPEVDLRVPA
LIPDDYLPDVHARLVLYKRIASARSDEDLRALQVEMIDRFGLLPPATKNLFASTELKLRA
EKLRARKIEVGDTGGHILFKPQPRIDPVQVIMLIQTQSSVYRMDGPEKIRFMQKFETPEN
KIEFVRELLEKLAEKDD
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgagtagccccaacgcgccacctctatccgatctccccattccgactaagcccggcgag
cacacgagctggcgcggcctatacggctgcggcgacacgcttgcgctcgcccaggccgtg
caagcgcggccaggcttgttcctggtgatagccccggacatgcagagtgtcctcaggctg
gagcacgaactgcgtttcttcctacccgataccctgcccgtactccagttcccggactgg
gaaaccctgccgtacgacgtgttttcaccgctgccggaaatcgtctcgcaacgcattcgc
accctggcccttctgcccgaagtcaagcggggcgtactggtgctgaccgccgcgacgctg
atgcaacgcatagcgccgcgcggccacatcctggcgcgcaccttcgccttgaccgtggga
gggcgtctcagcctggaaacgacacggcaacggctggaggccgtcggctatcaatgcgta
tcccaggtgatggaacacgcggaatttgccatccgcggatccatcatcgacatctatccc
atgggcagccagacgccctatcggatcgaattattcgacgaagacatcgagtcgatccgc
accttcgacccggaaagccagcgctcgctggacaaggtcgacaagatagcgctctatccg
gcgcgcgagtttccattcgacgaagacagcatcaagcatttccgtcgtgcctatcgcgcc
caattccccgacctgcccaccggcagcggcctctaccaggacatcagcaaaggcatcccg
gcgggcggcatcgagtattacctgccgctgttcgtcgagcatacggaaaccctgttcgat
tacctgcctgacaatgccacgctggtacggcatcgtgacgtcgacgccgccgcagccgag
ttctacgaagaaagcctgaatcgtttcgcgctgcgcaaaggcaatatcgaccgccctgcc
ctgccggtcgagatgctttttctcgatcctgcatcgctcaatcagcgcttgcagggctat
gcgggcatccatatcgcggagagcgccgtggaaccgctaggcgaagccaagtccacctta
gcctgccggcccctccccgaactggccatcgatcccaaacagaagcagccggcggccgcg
ctgcaaaactttttgaccgaattcgacggcaaactgctcttcgtcgcggaaaccactggc
caccgcgaagcgttgttggattccctgggcaaactgagcatacgtccacgcgtaatcgaa
cgctggaacgatttcctcgccaccgataacaagctgtcgctgctggtagcaccgctcgac
cacgggctgtggctgaccgacccgccgctggccatcgtcaccgagacccagctctccggc
gacaaggtccagcagcgccgacgccgccgcaagacgatggagcgcgatctcagcgcgctg
atgcgcaatctggaggaactggagataggctcgcccgtcgtgcatcaggatcacggtgtg
ggccgctatctgggcctgcaacggctcaacgtgggaggcatggacgcggaattcctcgcc
ctggaatacgccaataacgataagctctacgtgccggtctcctcgctgcacctgatcagc
cgttacagcggctcgagcgaggagaccgcgccgctgcacaaactgggcggcgaagcctgg
cagaaagccaagcgcagggcgatggagaaagcgcgcgacgtggccgccgaactactggac
atctacgcccgccgcgaggccaagcaaggccatgccttccaggcgctgaccgacgactat
gccgcgtttgccgccggtttccccttcgaggaaaccccggaccaggaaaacgccatcctc
gacgtcatcaaagacatgagctcgccgcgccccatggatcgcgtggtctgcggcgacgtg
ggcttcggcaagaccgaggtggccatgcgcgcggccttcatcgccgcgcacaatggccgc
caggtcgcggtgctggtaccgaccaccctgctggcccagcagcattaccagaacttccgt
gaccgcttcgccgactggcccatccgcatcgaggtcatgtcgcgcttcgtcggcaagaag
cagcaggacgaattcgcccgagccgccgccgaaggcaaggtcgacatcctgatcgggacg
cacaagctgctgcagaaagacatccagttcaagaacctggggctggtcatcatcgacgag
gaacaccgtttcggcgtcgctcagaaagagcacttcaagaagctgcgcagcgagctggac
atcctcaccctgaccgccacgccgataccgcgcacgctcaacatggcgctgggcggtttg
cgcgacatttccatcatcgccaccccgccgcccaaccgccatgccatccagaccttcgtg
agcgagtggagcgattcgctgacccaggaagccatcacccgtgaaatcaagcgcggcgga
caggtctatttcctgcacaacaaggtcgaaaccatagagaagatggtgcgcgagctggaa
gccttggttccggccgcgcgtatccagcatgcccacggccagatgccggagcgcgaattg
gagcgcatcatgctggacttctaccatcagcgcttcaacgtactggtggccaccaccatc
atcgaatccggcatcgacgtgcccagcgccaacaccatcctcatcaaccgcgccgaccag
ctcggactggcccagctacatcagttgcgcggtcgtgtaggacgctcgcaccatcgcgcc
tacgcctatctcctagtgccttcgaagaagctcatgaccgccgacgccatcaagcgcctg
gaggccatcgaagcctccggcgaactgggtgccggtttcctgatttcttcccacgacatg
gagatacgcggcgccggcgaattgctgggcggggagcagagcgggcagatcgaggagatc
ggcttcaccctgtactcagagctgctggaacgcgccgtggcggcgttgaaatccggtaag
cagcccgaactcgacgcgcccctggacggcggtccggaagtggatttgcgcgtgcccgcg
ctgataccggacgactatctgcccgacgtgcatgcgcgcctggtgttgtacaagcgcatc
gccagcgcccgcagcgacgaggacttgcgtgccttgcaagtggaaatgatcgaccgcttc
ggcctgctgccaccggccaccaaaaacctgttcgcctccaccgagctgaagcttagggcg
gaaaaactgcgcgctcgcaagatcgaggtgggtgacacgggcggccacatcctgttcaag
cctcagccaaggatcgatcccgtccaggtcatcatgctgatacaaacgcaatccagcgtt
taccgcatggacggcccggaaaaaatccgcttcatgcagaaattcgaaacgccggaaaac
aagatcgagtttgtgcgggagctgctggaaaaactcgcggaaaaggacgactaa
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