Methylococcus sp. EFPC2: JWZ97_05855
Help
Entry
JWZ97_05855 CDS
T10116
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
meef Methylococcus sp. EFPC2
Brite
KEGG Orthology (KO) [BR:
meef00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
meef03019
]
JWZ97_05855 (hrpA)
Enzymes [BR:
meef01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
JWZ97_05855 (hrpA)
Messenger RNA biogenesis [BR:
meef03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
JWZ97_05855 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
WHD_HA2
AAA_19
AAA_22
nSTAND3
T2SSE
SLFN-g3_helicase
AAA_30
nSTAND_NTPase5
NACHT
PhoH
AAA_23
Motif
Other DBs
NCBI-ProteinID:
QSA99042
LinkDB
All DBs
Position
complement(1386327..1390223)
Genome browser
AA seq
1298 aa
AA seq
DB search
MKVADLTAFEEQLGACLRKDQHRCRRTIDRLRNDLKSGKDIAAQLAELQSRLAESAAARK
ARAASVPALDYPPDLPVSGKKDEILEAILNNQVVIVCGETGSGKTTQLPKICLEAGRGVT
GYIGHTQPRRIAARSVAARIAEELRQEIGKAVGYKVRFHDHTSPDSLIKLMTDGILLAET
QNDRFLDQYDTLIIDEAHERSLNIDFLLGYMKWLLPRRPDFKLIVTSATIDPERFSRHFG
DAPIINVSGRTYPVEIRYRPMLVEADAEDETGDELQRGILSAVDELYRDTKGDILIFLIG
ERDIRETAESLRKHHPGDCEILPLYSRLSVAEQDRVFRPHGKRRVVLATNVAETSLTVPG
IRAVIDAGHARISRYSHRSKLQRLPIENISQASANQRAGRCGRIGPGICIRLYSEADFYR
RPEFTDPEILRTNLAAVILQMKALGLGDLADFPFLESPDERMVRDGLRTLQELNAMDDKR
RLTEIGKRLAKLPVDPRLGRILLAASDENSLTEVAIIVSALSLQDPRERPSDKAQAADQK
HAPFKDENSDFLSYLKLWKAYQEQKKHLSNSKLRQWCQGNFLSYLRMREWEDIHQQILLT
AKGELTLRFNQADSEYGEIHRPLLTGLLTNVSLKQEGSEYLGARGVKCQIWPGSALFKPR
PKWILSAEQVETTKVYARTVAKIEPEWIERCCAHIVKRHHYEPHWEKKAGRAAILERLTL
FNLTVLAGRRVPLENIDPVMAHDLFIRHALVLMEYDSKAPFFVHNRTLLEEAEYLQQKGR
RVDLVADEEWIYRFYDERIPQEVVSGVSFEVWRKQAEKKNPQLLFMTREDVTRKEDEALH
DQNFPDVWDMGGTKLRLEYRFEPGHEDDGVTVIVPLHVLNQLKPEPFQWLVPGLLREKLV
ALIKNLPKQTRKHFVPAPDFADKVLPQLDYRQGKLTEQMSASLRRMVGFAVPQAEWSEEG
IPLHLRMNFALVDDSGVVLARSRTLSELKQVHAQAAVSNFAELAKEELSMSGCRDWQFGE
LPERYQSADIQGFPALFDEGETVGLRVFDTPEAAAASQEQGLVRLFRLAMAKELKYLRKN
LPLGAPAELAYRQLAAHSFLYPELKPGRDLREDLLDRLMAALYLDNQPDIRTREAFERRL
SEGRGDIVGLGNTAARLMDDILILHADLNRKLKGLNSPAGEDMRSQLGHLIYAGFVAITP
YPRLKEIPRYLKALQFRLDKALQDANRDARLYAELAPHNTNYWTSVKQGKSVSTPERDDF
RWMLEEFRVSLFAQSLKTPYPVSAKRLDEAWRKRPKIV
NT seq
3897 nt
NT seq
+upstream
nt +downstream
nt
atgaaagttgccgatctgacggcgttcgaagaacaacttggggcctgcctgcgcaaagac
cagcaccgctgccggcgcacgatcgaccgcctgcgcaacgatctcaagtccggcaaggac
atcgcggcgcaactggccgaactgcaaagccgcctcgccgaatccgccgccgcccgcaag
gcccgcgcggccagcgtgccggcgctggattacccgccggacttgccggtctccggcaag
aaagacgagatcctcgaagccatcctgaacaatcaggtggtcatcgtctgcggcgagacc
ggctcgggcaagaccacccagctgccgaagatctgcctggaagcgggtcgtggcgtgacg
ggctacatcggccacacccagccgcgccgcatcgccgcgcgcagcgtggcggcacgcatc
gccgaggaattgcgccaggagatcggcaaggcggtgggctacaaggtccgtttccacgac
cacaccagcccggacagcctgatcaagctgatgaccgacggcatcctgctggcggagacg
caaaacgaccgctttctggaccagtacgacacgctgatcatcgacgaggcgcacgagcgc
agcctcaacatcgatttcctgctgggctacatgaaatggctgctgccgcgccggccggac
ttcaagctcatcgtcacctcggccaccatagaccccgagcgcttctcgcgccatttcggc
gacgcgcccatcatcaacgtctcgggccgcacctatccggtggaaatccgctaccggccg
atgttggtcgaggccgacgccgaagacgagaccggcgacgagttgcagcgcggcatcctc
tcggcggtcgatgaactctaccgcgataccaagggcgacatcctgatcttcctgataggc
gagcgtgacatccgcgagacggccgaatccctgcgcaagcatcatcccggggattgcgag
atcctgcccttgtattcgcgattgtccgtggccgagcaggaccgggtgttccggccgcac
ggtaagcgccgcgtcgtgctggccaccaacgtcgcggaaacttcgctcaccgtgccgggc
atacgcgcggtgatcgacgccggccatgcccgcatcagccgctacagccaccgcagcaag
ctgcagcgcctgcccatcgagaacatctcgcaggcctccgccaaccagcgcgccgggcgt
tgcggccgcatagggccgggcatctgcatccggctttattcggaagccgatttctaccgc
cggccggaattcacggatcctgaaatcctgcgcaccaacctggccgccgtcatcctgcag
atgaaggccctgggcctgggcgatctggccgacttccccttcctcgaatcacccgacgag
cgcatggtgcgcgacggcctgcgcaccctgcaagagctcaacgccatggacgacaagcgc
cggctcaccgagatcggcaagcgattggccaagctgccggtcgaccctcggctgggccgc
atcctgctggccgcatcggacgagaacagcctgaccgaggtggccatcatcgtttccgcc
ctgagcttgcaggacccgcgcgagcgcccgtcggacaaggcccaggcagcggatcagaaa
catgcgccgttcaaggacgagaattccgatttcctgagttatctcaagttgtggaaggcc
taccaggaacagaagaaacatctttccaacagcaagctgcggcaatggtgccagggcaac
tttctgtcctatctgcgcatgcgggaatgggaggacatccaccagcagatcctgctcacc
gccaagggcgagctcaccctgcgcttcaaccaggccgactcggaatacggcgagatccac
cgtccgttgctgaccggtttgctgaccaacgtcagcctgaagcaggaaggctcggaatat
ctcggcgcgcgcggggtgaagtgccagatctggccgggctcggcgctgttcaaaccgcgt
cccaaatggatactgtcggccgagcaggtggaaaccaccaaggtctatgcccgcaccgtc
gccaagatcgagccggaatggatagagcgctgctgcgcccacatcgtcaagcgccaccat
tacgagcctcactgggagaagaaagccggccgtgcggcgatcctcgagcgcctgaccctg
ttcaacctcaccgtgctggccggccggcgcgtgccgctggaaaacatcgatcccgtcatg
gcacacgatctgttcatccgccatgccctggttctgatggaatacgacagcaaggcgccg
tttttcgtgcacaaccgcaccctgctggaagaagccgagtatctccagcagaagggtcgg
cgcgtggatctggtcgccgacgaggaatggatttatcgattttatgacgagcgcatcccg
caggaggtcgtgagcggggtgagcttcgaggtctggcgcaagcaggcggagaagaaaaat
ccccagctgctgttcatgacccgcgaggacgtcacccgcaaggaagacgaggccttgcat
gaccagaatttccccgacgtctgggacatgggcgggaccaagctgcggctggaataccgc
ttcgaaccgggccatgaggacgacggcgtcaccgtgatcgtgcccttgcacgtgctcaac
cagcttaagcccgaacctttccaatggctggtgccgggcctgctacgggagaagctggtg
gcgctcatcaagaacctgcccaagcagacccgcaagcatttcgtgccggccccggatttc
gccgacaaggtactgccgcaactggattaccggcagggcaagctgaccgagcagatgagc
gccagcctgcgccgcatggtcggtttcgccgtgccgcaggccgaatggagcgaggagggc
atacccctgcatctgcgcatgaatttcgccctggtggatgacagcggcgtggtgctggcg
cgctcccgcaccttgtccgagctcaagcaggtccatgcccaggcggcggtgagcaatttc
gccgagctggccaaggaggaactgtccatgagcggctgccgcgactggcaattcggcgag
ctgccagagcgctaccagtccgccgacatccagggctttccggccctgttcgacgaaggc
gaaacggtgggcctgcgggtcttcgacacgccggaagcggccgccgccagccaggagcaa
ggcctggtgcgattgttccgcctggccatggccaaggagctgaaatacctgcgcaagaac
ctgccgctcggcgctccggccgaactggcttaccggcaattggcggcccattcttttctc
taccccgagctcaagccgggacgcgatctgcgcgaggacttgctcgaccggctcatggca
gcgctctatctcgacaaccagccggacatccgaacgcgtgaggcgttcgaacggcgtttg
agcgagggcaggggagatatcgtcgggctgggcaataccgcggccaggctgatggacgac
atactgatactgcatgccgatctgaaccgcaagctcaagggcctcaacagcccggccggc
gaagacatgcgcagccaactcggccatttgatctacgccggattcgtcgcaatcacgccc
tatccgagattgaaggaaattccccgctatctcaaggcgctgcaattccggctggacaaa
gcccttcaggacgccaaccgcgatgcccgtctgtacgccgaattggccccgcataatacg
aattactggacctcggtcaaacaaggcaaatccgtaagtacgcccgaacgcgacgatttc
cgctggatgttggaagaattccgcgtttccctgttcgcccaatcattgaaaacaccttat
ccggtttcggcgaagcgactggacgaggcctggcggaaacggccgaaaatcgtctag
DBGET
integrated database retrieval system
