Methylococcus sp. EFPC2: JWZ97_11670
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Entry
JWZ97_11670 CDS
T10116
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
meef Methylococcus sp. EFPC2
Pathway
meef03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
meef00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
JWZ97_11670 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
meef03400
]
JWZ97_11670 (sbcB)
Enzymes [BR:
meef01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
JWZ97_11670 (sbcB)
DNA repair and recombination proteins [BR:
meef03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
JWZ97_11670 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
JWZ97_11670 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
JWZ97_11670 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
QSA95896
UniProt:
A0A974VPN5
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All DBs
Position
complement(2755521..2756963)
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AA seq
480 aa
AA seq
DB search
MSRTTLYWHDYETSGIDPRRDRPVQFAGLRTDLDLHPIGEPLTLYCRPSLDTLPTPEASL
VTGITPQQAWEKGVCEADFVAAIHGELARPGTCALGYNTLRFDDEVTRNTLYRNFYDPYE
REWRSGNSRWDLIDAVRAAAALRPEGIEWPRDEQGRPSFRLEVLTAANGIAHAGAHDALV
DVRATVELARLLRQRQPRLYDFLWSNRGKREAAALIKLGEFAPVLHVSEKFPAERHCLAV
VVALARHPDNGNGVIVYDLSADPAPLLELDVEQIRARLFTPVRDMPEGVERIPLKTVHLN
RCPVLAPMNVLRPADIERLQLDLERCRRHLETLRRASGLDGKLAEVFSAAPPEKPDDGDP
DLMIYRGGFFGDADRYRMSEIRALGPEDLARRYFDFDDARLPEMLFRYRARNWPDTLSEE
ERARWETLRRTRLTEAGHGASITLTEYENRIEALGREHADDSRKLAVLEALRAWGREIIS
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgtccagaaccacactttactggcacgactacgagacctcgggcatcgatccgcggcgc
gaccgtcccgtgcaattcgccgggctcaggaccgacctggatctgcatcccatcggcgag
ccgctgacgctttattgccgtccatccctggatacgttgccgacacccgaagcgagtctg
gtcaccggcatcacgccgcaacaggcgtgggaaaaaggcgtttgcgaggcggatttcgtc
gccgcgattcatggcgaattggcacggcccggtacctgcgccttgggttacaacaccttg
cgcttcgacgacgaggtgacgcgcaacacgctgtaccgcaatttctacgacccctatgaa
cgcgaatggcgtagcggcaattcgcgctgggatctgatcgacgcggtgcgcgcggccgcc
gccttgaggccggagggaatcgagtggccaagggacgaacagggaagacccagttttcgt
ttggaggtcttgaccgcggccaacggcatcgcccacgccggcgcgcacgacgccctggtc
gacgtgcgcgcgaccgtcgaactggcccgcctgcttcgtcagcgtcagcccaggctgtac
gatttcctctggtccaaccggggcaagcgcgaagcggcggccctgatcaaactgggcgag
tttgcccccgtcctgcatgtttcggaaaaatttccggccgagcgccattgcctggcggtg
gtggtcgcgctggcccgtcatccggacaacggcaacggggtcatcgtctacgacctgagc
gccgatcccgcgcctttgctggaactggatgtcgagcaaatccgcgcccgattgtttacg
cccgtccgcgacatgcccgagggcgtggaacggatccccttgaagaccgtgcatctcaac
cgctgcccggtgctcgcgccgatgaatgtgctgaggccggccgacatcgaacgcctgcaa
ctcgatctcgagcggtgtcgcaggcatctggaaacgttgcgccgcgcatccggcctggac
ggcaagctggcggaggtcttttccgctgctccgccggaaaagccggacgacggcgatccc
gatttgatgatctaccggggcggatttttcggcgatgcggaccgctaccgcatgtccgag
atacgcgctttggggccggaggatctcgcccggcgctatttcgatttcgacgacgcccgc
ctgccggaaatgctgttccgctaccgcgcccgcaactggcccgacacgctgagcgaggag
gaaagggcgcgttgggagaccttgcgccggacccggctgacggaagccggtcatggcgcc
tccatcaccctgacggagtatgagaaccgcatcgaggcactgggtcgggagcatgcggac
gactcgcgcaagctggccgtgctcgaggcgctgcgcgcctggggtcgggaaattatcagt
taa
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