Methylococcus sp. EFPC2: JWZ97_15730
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Entry
JWZ97_15730 CDS
T10116
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
meef Methylococcus sp. EFPC2
Pathway
meef03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
meef00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JWZ97_15730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
meef03019
]
JWZ97_15730
03009 Ribosome biogenesis [BR:
meef03009
]
JWZ97_15730
Enzymes [BR:
meef01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JWZ97_15730
Messenger RNA biogenesis [BR:
meef03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JWZ97_15730
Ribosome biogenesis [BR:
meef03009
]
Prokaryotic type
rRNA helicases
JWZ97_15730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
Cas3-like_C_2
Transketolase_C
Motif
Other DBs
NCBI-ProteinID:
QSA96644
UniProt:
A0A974ZNS5
LinkDB
All DBs
Position
complement(3679335..3681068)
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AA seq
577 aa
AA seq
DB search
MQDTQTTPASFSELAIAAPILQAIAEVGYETPSPIQAASIPFLLAGHDLLGQAQTGTGKT
AAFALPVLNGIDLTRREPQALVLTPTRELALQVAEAFQSYARHLPDFHILPIYGGQSMET
QLRQLKRGVHVIVGTPGRIMDHLRRQTLSLDSLHTLVLDEADEMLKMGFIEDVEWILEHT
PAERQVALFSATMPEAIRKVARKHLRDPKEVSIQAKTATVEAISQRYWPVSGVHKLDALT
RILEVEDFDAMIIFVRTKVATEELAEKLEARGYAASALNGDMSQALREKTVERLKKKSLD
IVVATDVAARGLDVERISHVVNYDIPYDTEAYIHRIGRTGRAGRKGNAILFVAPRERRML
LAIEKATRHRIREMRLPTREDIAERRVEQFKQLVMSTLEGEELSFYRQFVQQLGKEQSLS
PLDIASALTFLAQKDRPLVPAEKEKPTSEEKSGDRYEARAVRDRGEERPRREKGRPRDDG
GALYRIEVGRADGVNPKDIVGAIANEAGIPGKDIGHIKLQDTYSTVSLPPNLPAAVLKRL
ERTFIMGKAIRIRPWSEEPPTGARPIRKRKPAPRTGD
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atgcaagacacccaaactacccccgccagcttctccgaactggctatcgccgcgcccatc
ctgcaggccattgccgaagtcggctacgaaacgccctcgccgatccaggcggcgagcatc
ccctttctgctcgccggccacgacctgctcggccaggcacaaaccggtaccggtaaaacc
gctgcgttcgccttgcccgtattgaacggcatcgatttgacccgccgcgagccacaagcc
ctggtgctgactcccacgcgggaactcgccctccaggtcgccgaggccttccagagttat
gcccggcatctgcccgacttccatatcctgccgatttacggcgggcagtcgatggaaacc
cagttgcgccagctcaagcgcggagtccatgtcatcgtcggcacacccggccgcatcatg
gatcatctgcggcgccagaccctttcgctggacagcctgcacaccctggtgctggacgag
gccgacgagatgctcaagatgggcttcatcgaagacgtggaatggatactggaacacacg
cccgccgagcggcaggtcgccctgttttccgcgaccatgccggaagccatccgcaaggtg
gcccgcaagcatctgcgcgaccccaaggaagtgagcatccaggccaaaacggcgacggtg
gaggccatcagccagcgctattggccggtttccggcgtgcacaagctggacgcgctgacc
cgtattttggaagtggaagacttcgacgccatgatcatcttcgtgcgcaccaaggtggcg
accgaggaattggctgaaaagctggaggcccgcggctatgcggcgtcggccctgaacggc
gacatgagtcaggccttgcgggaaaagaccgtcgagaggctgaagaaaaaatcgctcgac
atcgtggtagctaccgacgtggcggcgcgcggcctggacgtggaacgtatcagccatgtg
gtcaactacgacatcccgtacgacaccgaagcctacatccaccgcatcggccgtaccgga
cgcgccgggcgcaagggtaacgctatcctgttcgtcgcaccgcgtgagcgccgtatgctg
ttagccatcgaaaaggccacgcgccaccgcattcgggaaatgcgcttgccgacgcgggaa
gacatcgccgaacgccgggtcgaacagttcaagcagttggtgatgagcacgctggaaggt
gaagagctcagcttctaccgccagttcgtacagcaactgggcaaggaacagagcctgtcg
ccgctggacatcgcttcggccctgactttcctggcccaaaaggaccgccccctggtaccg
gcggagaaagaaaagcccacttccgaagaaaagtccggcgaccgatacgaagcacgcgct
gtccgcgatcgcggcgaggaacggccacgccgagaaaagggccggccgcgtgatgacggc
ggtgcgctttaccggatcgaggtcggccgggcggatggcgtcaatcccaaggacatcgtc
ggggccatcgccaacgaagccggcataccgggcaaggacatcggccatatcaagctgcag
gacacctacagcactgtcagcctgccgcccaatttgcctgcggccgtgctgaaacggttg
gaacggaccttcatcatgggcaaggcgatcaggatacgcccctggagcgaagaaccgccg
accggtgcccggccgatccggaaaagaaaaccggcgccgagaaccggcgattga
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