Methylomonas sp. EFPC1: JWZ98_03525
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Entry
JWZ98_03525 CDS
T10319
Name
(GenBank) 3'-5' exoribonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
meep Methylomonas sp. EFPC1
Pathway
meep03030
DNA replication
meep03430
Mismatch repair
meep03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
meep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JWZ98_03525
03430 Mismatch repair
JWZ98_03525
03440 Homologous recombination
JWZ98_03525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
meep03032
]
JWZ98_03525
03400 DNA repair and recombination proteins [BR:
meep03400
]
JWZ98_03525
Enzymes [BR:
meep01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
JWZ98_03525
DNA replication proteins [BR:
meep03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
JWZ98_03525
DNA repair and recombination proteins [BR:
meep03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
JWZ98_03525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
RNase_H_2
GIY-YIG
DNA_pol_A_exo1
Motif
Other DBs
NCBI-ProteinID:
QSB02044
LinkDB
All DBs
Position
751114..752514
Genome browser
AA seq
466 aa
AA seq
DB search
MLKHVNQPLAFVDLETTGATATKDRITEIGIVLVDEDGVREWNQLVNPQTRIPLFIEQMT
GISNEMVAQMPSFAQVAGEVAELLEGRLFIAHNARFDYGFLKNEFSRLDMSFRPQVLCTV
KLSRALYPQYHRHNLDSLIERHGLHAKDRHRALADAQLIHQFWTQACEQFSEAVVDQAAQ
RLVGRSSLPSNIDPNLIHDLPETPGVYLFYGENDLPLYIGKSVNIRNRVLAHFGADHKNS
KEMSLAQQLRRIDWIETAGELGALLLEARLIKEKTPVHNQRLRRKNALCAWQLQQQGEHL
KPVLSWAGELDFGAQNNLYGLYHSQRDAQKALRGVAEQHGLCLSVLGLEKTAAGRPCFGH
QIKKCRGACVGLEAPLAHAARLLIAMQKLKLAVWPYPGAIGVREGAELHVIDRWCYLGTA
KNEADIAELLQSGRPTFDRDTYMLLSKSLKKAEVVVLSRMLEMVGK
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atgctgaagcacgttaaccaaccgctggccttcgtcgacctggaaaccaccggcgccacc
gccaccaaagaccgcatcaccgaaatcggtatcgtgctggtcgatgaagacggtgtgcgg
gagtggaaccaactggtcaacccgcaaacccggattccgttgttcatcgaacaaatgacc
ggcatcagcaatgaaatggtggcgcagatgcccagctttgcccaagtggccggcgaggtg
gcggaattgctggaagggcgcttgttcattgctcacaacgcccgttttgactacgggttt
ttgaagaacgaattcagccggttggacatgagctttcggccgcaagtgttatgtaccgtc
aaactgtcgcgggctttgtatccgcagtaccacaggcataatctggacagcctgatcgaa
cggcatggcctgcatgccaaagaccggcatcgggctttggccgatgcccaattgattcac
caattctggacccaggcttgcgagcagttttccgaagcggtggtcgatcaagccgcccag
cgtctggtcggccgctccagcctaccgtccaacatcgacccaaacttgatccacgatttg
ccggaaacccccggcgtttacctgttttacggtgagaacgacctgccgttgtacatcggc
aagagtgtcaacatccgcaaccgggtgctggcgcatttcggcgccgatcacaagaacagc
aaggaaatgagtctggcccagcaactgcggcgcatcgactggatagaaaccgccggtgag
ttgggcgcgctgttgctggaagcgcgcctgattaaggaaaaaacgccggtgcataaccag
cgcctgcgccgcaaaaacgccttgtgcgcctggcaattgcaacaacagggcgaacatctc
aagccggtgttgagttgggccggcgaactggatttcggtgctcagaataatttgtacggc
ctgtatcacagtcagcgagacgcccagaaagccttacgcggcgtcgccgagcagcacggc
ctgtgtttgagcgtgttgggcctggagaaaaccgccgccggccggccctgctttggccac
cagatcaaaaaatgccgcggcgcctgcgtcggtttagaagcaccgttggcgcacgcggcg
cggctgttgatcgccatgcaaaaactcaaactcgcggtctggccgtatccgggcgcgatt
ggcgtgcgcgaaggcgcggaactgcatgtgattgatcgctggtgttatctggggactgcg
aaaaacgaagcggacatcgcggagctgttgcagagcggtcggccgacttttgatcgggat
acttatatgttgctgagcaagtcgttgaaaaaggcggaggttgtagtgttgtcgcgaatg
ttggaaatggtaggtaaatga
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