Methylomonas sp. EFPC1: JWZ98_09065
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Entry
JWZ98_09065 CDS
T10319
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
meep Methylomonas sp. EFPC1
Pathway
meep03410
Base excision repair
meep03430
Mismatch repair
meep03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
meep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
JWZ98_09065 (recJ)
03430 Mismatch repair
JWZ98_09065 (recJ)
03440 Homologous recombination
JWZ98_09065 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
meep03400
]
JWZ98_09065 (recJ)
DNA repair and recombination proteins [BR:
meep03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
JWZ98_09065 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
JWZ98_09065 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JWZ98_09065 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Glyco_transf_4
Peripla_BP_6
Dict-STAT-coil
Motif
Other DBs
NCBI-ProteinID:
QSB03613
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Position
1958024..1959769
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AA seq
581 aa
AA seq
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MYLQSVKKVILPRPVQTKNPHFGEMDPVLQRIFSSRGVQSADELDRSLASLPSPWLLTGM
KEMVEHLVSAIKQQQKITVVADFDADGATSCALALKGFALLGAKAVDFVVPNRFEYGYGL
TPEIVELVKRQSPDIIVTVDNGISSIDGVKAAKAAGIRVLITDHHLPGLELPDADAVVNP
NLPDDKFPSRNVAGVGVMFYILMALRIRLRELHWFEKTGIPEPNLARLLDYVALGTVADV
VALDQVNRILVHQGLLRIRSGQCQPGIKALAEVAGKQLSGIHASDLGFSIAPRLNAAGRM
DDMSLGIQCLLTDDAGLAHDIAEQLHALNQDRKEVEGQMKTEAMALLAEMKALDEKHVPA
GVCLYDGNWHQGVIGILASRIKDRLHRPVIAFAPADNGDIKGSARSINGVHIRDVLSEIA
ARHPQILSKFGGHAMAAGLTIKLHDYPHFALAFAETVAAKLELVDLEQKVYSDGELDEQH
MTLAFAETLQQAAVWGQTFPEPVFNGVFDVIQCRIVGQQHLKFVLRLPFSGQLLDAIAFF
ADHPEKWLGCRKINAAYKLDINEFRGQRSLQLLLHYLEKWE
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgtatttgcaaagcgttaagaaagtcattctgccccgaccggtgcagactaaaaatccg
cactttggcgagatggacccggtgctgcaacggatttttagcagtcgtggtgtgcagagt
gccgatgaattggatcggagtctggcgagtttgccttcgccgtggctgctgaccggtatg
aaggagatggtcgagcatttggtgtcggcgatcaaacagcagcaaaaaattaccgtggtc
gccgattttgatgccgacggcgccaccagctgcgccctagctttaaaaggcttcgcgctg
ctcggggcgaaagccgtggattttgtggtgcccaaccgttttgaatacggttatggcttg
acgccggaaattgtggagttggtgaagcggcagagccccgatattatcgtcactgtggac
aatggcatatccagtattgacggtgtcaaagccgccaaggctgctggtatcagggtgttg
attaccgatcaccatttaccaggactggaactgccggacgccgatgccgtcgtcaatccc
aatttgcctgacgataagtttccaagccgaaacgtcgccggcgtaggggtgatgttttat
attttgatggccttgcggattcgtttacgcgaattgcattggtttgaaaaaaccggcatc
cctgagccgaatctggcgcgacttttagattatgtagccttgggcactgtcgccgacgtg
gtggctttggatcaggtcaaccggattttggtgcatcaaggcttattgcgtatccgctcc
ggacaatgtcagcccggtatcaaggctttggcagaggtcgccggcaagcagttgtccggc
atacatgccagcgatttaggtttttccatcgcaccgcgtttgaacgcggccggacggatg
gacgatatgtccttaggcattcagtgcttgctgaccgacgatgccggcttggcacatgat
atagccgaacaattgcatgccttgaaccaggatcgaaaagaagtcgaagggcagatgaag
accgaggccatggctttgctggcggaaatgaaggctctggatgaaaaacacgtaccggct
ggtgtgtgtttatatgacggcaattggcatcaaggggtaatcggcatcctggcgtcgcgg
atcaaggatcgactgcatagaccggttatcgcctttgcgccagctgataacggcgacatc
aagggctcggcgcgctccatcaatggggtgcatatccgcgatgtactcagcgaaattgca
gccaggcatccgcagatattaagcaagttcggcggtcatgcgatggcggcgggtctgacg
attaaactacacgattatccgcattttgccctggcttttgccgagacagtggcggcgaaa
ctggagttggtggatctggagcagaaggtctattccgacggcgaattggatgagcagcac
atgactttggctttcgcggaaacgctccagcaggcggcggtgtgggggcaaaccttcccg
gaaccggtatttaatggcgtattcgatgtgatccaatgccgcatcgtcgggcagcagcat
ttaaagtttgtgttgcgcttgccgtttagcggccagttgttggatgcgatagcgtttttt
gccgatcacccggaaaaatggctgggttgccgaaaaatcaacgcggcctataagttggat
attaacgaatttcgcgggcaacgcagtctgcaactgttgttacattatctggagaaatgg
gaataa
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