Methylomonas sp. EFPC1: JWZ98_09170
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Entry
JWZ98_09170 CDS
T10319
Name
(GenBank) integration host factor subunit beta
KO
K05788
integration host factor subunit beta
Organism
meep Methylomonas sp. EFPC1
Brite
KEGG Orthology (KO) [BR:
meep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
meep03032
]
JWZ98_09170
03036 Chromosome and associated proteins [BR:
meep03036
]
JWZ98_09170
03400 DNA repair and recombination proteins [BR:
meep03400
]
JWZ98_09170
DNA replication proteins [BR:
meep03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
JWZ98_09170
Chromosome and associated proteins [BR:
meep03036
]
Prokaryotic type
Nucleoid associated proteins
IHF (integration host factor)
JWZ98_09170
DNA repair and recombination proteins [BR:
meep03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Facilitator
JWZ98_09170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_euk_1
HU-CCDC81_euk_2
TetR_C_30
DUF2729
HU-CCDC81_bac_1
HU-CCDC81_bac_2
Ub-RnfH
Motif
Other DBs
NCBI-ProteinID:
QSB03616
LinkDB
All DBs
Position
1985165..1985470
Genome browser
AA seq
101 aa
AA seq
DB search
MTKSELIEMLARKQPHLALKDVELAVRCVVDHLSDTLASGDRIEIRGFGSFSLHHRSARL
GRNPKTGDSVSLTEKHVPHFKPGKELRDMVDASREKYKIVD
NT seq
306 nt
NT seq
+upstream
nt +downstream
nt
gtgacgaaatcagaattgatagagatgctggcacgaaaacagcctcatctcgcgcttaaa
gatgttgaattggcagttagatgcgttgttgatcacttgagcgatacgttggcaagtggc
gataggatagaaattagaggttttggcagtttttcgttacaccatcgttctgcacgactg
ggacgtaaccccaagaccggcgattcagtgtccttaacagaaaagcatgtgccgcatttt
aaaccgggaaaggagttacgggatatggttgatgcttccagggaaaaatacaaaatcgtc
gattga
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