Methylomonas sp. EFPC1: JWZ98_09395
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Entry
JWZ98_09395 CDS
T10319
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
meep Methylomonas sp. EFPC1
Brite
Enzymes [BR:
meep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
JWZ98_09395 (hrpA)
Messenger RNA biogenesis [BR:
meep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
JWZ98_09395 (hrpA)
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Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
QSB03118
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Position
2037504..2041397
Genome browser
AA seq
1297 aa
AA seq
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MPVPDTLKQLAKNLQNCMGTDRHGLKRQLDRLRSEASKGKDVAGQVQQVADKIERSVGRC
NQRRASVPVINYPDLPVSGKKDEIAELIKNHQVTIVCGETGSGKTTQLPKICLEIGRGVT
GLIGHTQPRRIAARTVADRIAEELGQPIGQAVGYKVRFHDQTHPNSLVKLMTDGILLAES
QNDPYLNQYDTIIIDEAHERSLNIDFLMGYLRWLLPKRPDLKVVITSATIDPERFAKHFN
DAPIVNVSGRTYPVDVRYRPIELIEEDDETSADLQQAILDAVDELYRDMRGDILIFLSGE
HEIRETTESLRKSHNNTRYEVLPLYSKLSVSEQERVFKPSGNKPRIVLATNVAETSLTVP
GIRCVIDSGHARISRYSAKSKIQRLPIERISQASANQRAGRCGRVAEGICIRLYSKEDYL
ARPEFTDPEILRTNLSSVILQMAALKLGDIEEFPFVEPPDEKMVRDGKTSLFEVDALDKQ
GNLTETGRQLAKIPTDPKLARMLLAAAQLGSLHEVAIIVSALSIQDPRDKPADKLPQAEA
KHAQFKAEDSDFLSLLNLWNAFEEQKKHLTNSKLRKYCQDNFLSYIRMREWHDIHTQIMQ
VARGDLGLKTSGNPANYEQIHMALLPGLLSNIGFRHEQYEYLGARGLKFFIFPGSGQHKA
KPKWIMAAEQVETSKVYARTVAKIEPEWIESCAQHLVKRNYYDPHWEKNAGRSGVYERTL
LYGLTLQAKRKVPYENVDPKAAREMFIRHALVNHDYHSNAPFFKANEALLEEVGYIQHKG
RRVDLVEDEEWLYQFYDKKLPAEVVSGITLDQWRKKVERDNPKILFLTKEDLTRHDDGKI
NDWDFPDSKKVGDLTIELHYRFEPGHDEDGVTAIVPVHQLNQIRQAPFDWLVPGMLEEKV
TALIKSLPKHLRKHFVPVPNTAKACLEIEPDFKGSLFEWLSGRLRKLTGESIPLNEWQPD
ALPDHLKMNFRIVDDHGRALGYGRNLAKLQADHATKAGDSFDKLAQEEMNHTGCIAWAFD
DLPETWQFMQKGQTFIGFPAIVDEGNTVGVKILDTQYKAELAHFDGLTKLFQLQCRKDAQ
YLLKNSGVQATLQLAYNQLPKHPLLTERPGGDFKEDLLFLIFNSVFVADSAIRSQQQFEA
ALAAKKATLVTVGNQVGKHVTEIMANYQTVRQRLKQPGVSPNLREDLEKQLSLLLFSGFL
RYTPLAQIQAMPRYLKAIECRLDKQKPDSADIQGLHRLSQRFWQHVEKQMKTLVPMPERE
AFRWSLEELRVSLFAQQLKTAYPVSVQRLEKTWNEKF
NT seq
3894 nt
NT seq
+upstream
nt +downstream
nt
atgcctgttcctgacaccctgaagcaactcgccaaaaatctccaaaactgcatgggcacc
gatcgccacggcttgaaacgccagctcgaccgcttgcgcagcgaggcgagtaagggcaag
gatgtggccggacaagtgcagcaagtggcggataagatcgagcgttcggtcgggcggtgc
aatcagcgccgggcttcggtgccggtgattaattaccctgatttgccggtcagcggcaag
aaggacgagattgccgagttgattaaaaatcatcaagtcaccatcgtctgcggcgagacc
ggttccggcaagaccacgcagttgccgaagatttgtctggaaatcggccgtggcgtaacc
ggtttgatcggtcacactcaaccacgaagaatcgcggcccgcactgtcgccgaccgcatc
gccgaggaattgggccagcccatcggccaggcggtgggttacaaggtgcgttttcacgac
cagacccaccccaattcgctggtcaagctgatgaccgacggtatcctgctggccgagtcg
cagaacgatccttacttaaaccaatatgacaccatcattattgatgaggcccacgagcgc
agcctgaacatcgattttctgatgggctatctacgctggctattgccgaagcggccggat
ttgaaggtggtgattacctccgcgaccatcgatccggagcgctttgccaagcattttaat
gatgcccccatcgtcaacgtgtctggtcgtacctatccggtggatgtgcggtatcggccc
atcgaactgatcgaggaagacgacgaaacctccgccgatttgcagcaagctattctggat
gcggtggacgagttgtatcgggatatgcgcggcgacattctgattttcttgagcggcgag
catgaaattcgcgagaccaccgaatccttgcgcaagtcgcataacaacacccgttacgaa
gtgttgccgctgtattccaaactcagcgttagcgagcaggagcgggtgttcaagcccagc
ggcaacaagccgcgcattgtcttggcgaccaacgtcgcagagacttcgctaacggtgccg
ggtatacgctgtgtgatcgattccggccacgcccgcattagccgctacagcgccaagagc
aagattcaacgcctgccgatcgaacgcatttcgcaagccagcgctaaccaaagggcagga
cgttgcggccgggtggccgaaggtatttgcatcaggctgtattcgaaagaggattatctg
gctcggccggagtttaccgatccggagatactgcgcaccaatctatcgtcggtgattttg
cagatggcggcgctgaagctcggcgacatcgaagaattcccgttcgtcgaaccgcccgac
gaaaaaatggtccgcgacggcaagacttcgctgttcgaagtcgatgcgttggataagcag
ggcaatctcactgaaactggccggcagttggcgaagattccgaccgaccccaaactggcg
cgcatgctgctggcagcggcgcaactgggttcgctgcacgaggtggcgatcatcgtctcg
gcgctgagcatccaggacccgcgcgacaaaccggccgataaattgccgcaggccgaagcc
aaacatgcccagttcaaggccgaagattcggactttttgagtttgctgaatctgtggaat
gcctttgaagaacagaaaaagcatctgaccaacagcaaactgcgcaagtattgccaggac
aatttcttatcctatatccgcatgcgcgaatggcatgacatccatactcaaattatgcag
gtggcgcgcggtgatttgggcttgaagaccagtggcaatccggccaattacgaacagatt
catatggcgttgctgccgggtttgttatcgaatatcggttttagacacgagcaatacgaa
tatctgggtgcgcggggtttgaagtttttcatctttccgggttccggccagcataaggcc
aaaccgaaatggatcatggccgccgaacaagtcgaaaccagcaaggtctatgcacggacc
gtcgccaagatcgagccggaatggatagaatcctgcgcccaacatttggtcaaacgcaat
tactacgacccgcattgggagaaaaacgccggtcgtagcggggtttacgagcgcacctta
ttgtacggtttgaccttgcaggccaagcgcaaagtgccttacgaaaacgtcgatcctaaa
gccgcgcgggagatgtttatccgccatgcgttggtgaatcacgattatcacagcaacgcg
ccgttctttaaggccaacgaggccttgctggaagaggtgggttacatccagcacaagggc
cgccgcgtcgatttggtggaagacgaggaatggctgtatcagttttacgataaaaaactg
ccagccgaggtggtcagcgggattaccctcgatcaatggcgcaagaaagttgagcgcgat
aatccgaagattctgtttctgactaaggaagatttgacccgccacgacgacggcaagatc
aacgattgggattttccggatagcaagaaggttggcgatttgactatcgaattgcattac
cgctttgagccgggtcacgacgaagacggggtgacggccatcgtacctgtgcatcagctc
aatcaaattcgccaggcgccgttcgattggttggtcccgggcatgctggaagaaaaagtc
acggccttgatcaaatcgctacccaagcatctgcgtaagcatttcgtgccggtgccgaac
accgccaaagcttgcctggaaattgaaccggattttaagggctcgttgttcgagtggttg
agcggtcgtttgcgcaaactgaccggcgaatcgatacccttgaatgagtggcagccggat
gccttgccggaccatttgaaaatgaatttccgcatcgttgatgatcatggccgggccttg
ggctatggtcgcaatctggccaagttgcaagctgatcatgccaccaaggctggcgacagt
ttcgacaagttggcgcaagaggagatgaatcataccggctgcattgcctgggcattcgac
gacttgcccgagacttggcagttcatgcaaaaaggccagaccttcatcggctttccggcc
attgtcgatgaaggcaacacggtgggggtgaagatactcgacacgcaatataaggccgag
ttggcgcatttcgacggcttaaccaagttgtttcagttgcagtgccgcaaggacgcccag
tatttgttaaaaaacagtggggtccaggccaccttgcaattggcctataaccaactgccc
aagcatccgttgttgacagaacggccgggcggcgattttaaggaggatctactattcttg
atctttaacagtgtgtttgttgctgatagtgcgattcggagccagcagcagttcgaagca
gcgctggcggccaaaaaggctacgctggtcacggttgggaatcaggtgggcaagcatgtc
acggaaatcatggcaaactatcaaacggtaagacagcgattgaagcagcctggcgtcagc
ccaaatttgcgggaagacttggaaaaacaactgagtttgctgctgtttagtggtttctta
cgatatacgccgttggcgcagatacaagcgatgccgcgttatttaaaagccattgagtgt
cgtctggataagcaaaagcccgattcggcggacatccaaggtctgcacaggctatcgcaa
cgcttttggcagcatgtcgaaaagcaaatgaagactttggtgccgatgccggaacgcgaa
gccttccgctggagtttggaggaattgcgtgtgtccttgtttgcgcagcaactgaaaacg
gcttatccggtttcggtgcagcgtctggaaaagacttggaacgaaaagttttaa
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